Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIV08_RS02845 Genome accession   NZ_CP045324
Coordinates   614363..614902 (+) Length   179 a.a.
NCBI ID   WP_058090011.1    Uniprot ID   A0A142FTP3
Organism   Marinobacter sp. THAF197a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 609363..619902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV08_RS02835 (FIV08_02875) uvrA 609936..612755 (-) 2820 WP_152437265.1 excinuclease ABC subunit UvrA -
  FIV08_RS02840 (FIV08_02880) - 612936..614306 (+) 1371 WP_152437266.1 MFS transporter -
  FIV08_RS02845 (FIV08_02885) ssb 614363..614902 (+) 540 WP_058090011.1 single-stranded DNA-binding protein Machinery gene
  FIV08_RS02850 (FIV08_02890) - 615115..616038 (+) 924 WP_228715485.1 biogenesis protein MshI -
  FIV08_RS02855 (FIV08_02895) - 616035..616655 (+) 621 WP_227510293.1 PilN domain-containing protein -
  FIV08_RS02860 (FIV08_02900) gspM 616652..617329 (+) 678 WP_152437267.1 type II secretion system protein GspM -
  FIV08_RS02865 (FIV08_02905) - 617331..617660 (+) 330 WP_072678391.1 hypothetical protein -
  FIV08_RS02870 (FIV08_02910) - 617657..618406 (+) 750 WP_228715486.1 secretin N-terminal domain-containing protein -
  FIV08_RS19800 (FIV08_02915) - 618511..619170 (+) 660 WP_267313130.1 DUF6701 domain-containing protein -
  FIV08_RS02875 (FIV08_02920) - 619184..619630 (-) 447 WP_072678380.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19761.84 Da        Isoelectric Point: 4.9464

>NTDB_id=393438 FIV08_RS02845 WP_058090011.1 614363..614902(+) (ssb) [Marinobacter sp. THAF197a]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPRTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GRLQTRKWQNKEGQDVYTTEIVVDINGQMQMLDSRGGEGGMNQGAPQGRPQQQPQSQYNAPPQQQGGQAQQPSGGYNPQG
QQSGGMPEPIDDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=393438 FIV08_RS02845 WP_058090011.1 614363..614902(+) (ssb) [Marinobacter sp. THAF197a]
ATGGCACGAGGCATTAACAAGGTAATTCTCATTGGTAATCTGGGCCAGGACCCGGATACCCGCTATACCCCGAATGGCAA
CGCGGTTGTGAATCTCAACCTGGCTACCGATGAAAGTTACAAGGATCGCCAGACTGGCCAGATGGTACCGAGAACCGAAT
GGCACCGGGTTGTGCTGTTCGGCAAGGTGGCGGAAGTGGCCGGCCAGTACCTGCGTAAAGGTTCCAAGGTGTATATCGAG
GGTCGCCTGCAAACCCGCAAGTGGCAGAATAAAGAAGGACAGGACGTATACACCACCGAGATTGTGGTAGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGTGGCGAAGGTGGCATGAATCAGGGCGCTCCCCAGGGCCGGCCGCAGCAGCAGC
CCCAATCTCAGTATAATGCTCCGCCCCAGCAGCAGGGTGGCCAGGCTCAGCAGCCGTCCGGGGGTTATAACCCTCAGGGG
CAGCAGAGCGGTGGCATGCCGGAGCCGATTGATGATTTTGATGACGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.839

100

0.57
  ssb Glaesserella parasuis strain SC1401

51.872

100

0.542
  ssb Neisseria meningitidis MC58

44.262

100

0.453
  ssb Neisseria gonorrhoeae MS11

44.262

100

0.453

Multiple sequence alignment