Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIV09_RS10720 Genome accession   NZ_CP045318
Coordinates   2179787..2180326 (+) Length   179 a.a.
NCBI ID   WP_152449937.1    Uniprot ID   -
Organism   Roseivivax sp. THAF197b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2174787..2185326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV09_RS10700 (FIV09_10795) miaA 2175517..2176422 (+) 906 WP_172975687.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FIV09_RS10705 (FIV09_10800) - 2176426..2177283 (+) 858 WP_152449934.1 helix-turn-helix transcriptional regulator -
  FIV09_RS10710 (FIV09_10805) - 2177280..2178971 (+) 1692 WP_152449935.1 ABC transporter substrate-binding protein -
  FIV09_RS10715 (FIV09_10810) - 2178972..2179565 (-) 594 WP_152449936.1 lytic transglycosylase domain-containing protein -
  FIV09_RS10720 (FIV09_10815) ssb 2179787..2180326 (+) 540 WP_152449937.1 single-stranded DNA-binding protein Machinery gene
  FIV09_RS10725 (FIV09_10820) - 2180571..2181635 (+) 1065 WP_152449938.1 site-2 protease family protein -
  FIV09_RS10730 (FIV09_10825) aroB 2181613..2182734 (-) 1122 WP_152449939.1 3-dehydroquinate synthase -
  FIV09_RS10735 (FIV09_10830) - 2182731..2183300 (-) 570 WP_152449940.1 shikimate kinase -
  FIV09_RS20400 (FIV09_10835) - 2183402..2183551 (+) 150 WP_172975688.1 hypothetical protein -
  FIV09_RS10740 (FIV09_10840) - 2183541..2185127 (+) 1587 WP_254702429.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18834.40 Da        Isoelectric Point: 5.3474

>NTDB_id=393427 FIV09_RS10720 WP_152449937.1 2179787..2180326(+) (ssb) [Roseivivax sp. THAF197b]
MAGSVNKVIIVGNLGRDPETRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARIAEQYLKKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDSRSDSGGGGGYGGGGGGGGGYSDDYGGGYGGGDQGGSYGGGQGSG
GGGGGSRAPARDIDDEIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=393427 FIV09_RS10720 WP_152449937.1 2179787..2180326(+) (ssb) [Roseivivax sp. THAF197b]
ATGGCCGGATCCGTGAACAAGGTCATCATCGTGGGCAATCTCGGGCGCGATCCCGAAACGCGCACGTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCGACCTCCGAGAACTGGAAAGACAGGAACACCGGCGAGCGGCGCGAGAAGACGGAAT
GGCATTCTGTCGCCATCTTCTCCGAACCGCTGGCACGCATCGCGGAGCAATATCTCAAGAAGGGCTCCAAGGTGTATATC
GAGGGCCAGCTCGAGACGCGCAAATGGCAGGATCAATCCGGCCAGGACCGCTATTCGACCGAGGTCGTGCTGCGCCCCTA
TCGCGGGGAGCTGACGCTGCTCGACAGCCGGTCCGATAGCGGCGGTGGCGGCGGCTATGGCGGCGGCGGCGGCGGAGGCG
GCGGCTATTCCGACGATTACGGCGGCGGCTATGGCGGTGGCGATCAGGGCGGCAGCTACGGCGGTGGCCAGGGCTCCGGC
GGCGGCGGTGGCGGCTCCCGTGCACCGGCGCGGGACATCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.731

100

0.536
  ssb Vibrio cholerae strain A1552

48.045

100

0.48
  ssb Neisseria meningitidis MC58

40.659

100

0.413
  ssb Neisseria gonorrhoeae MS11

40.11

100

0.408

Multiple sequence alignment