Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GCS73_RS03035 Genome accession   NZ_CP045308
Coordinates   578064..578537 (-) Length   157 a.a.
NCBI ID   WP_003633038.1    Uniprot ID   D3HPN2
Organism   Legionella longbeachae strain B41211CHC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 573064..583537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCS73_RS03000 (GCS73_02970) rpmJ 573444..573557 (+) 114 WP_012978806.1 50S ribosomal protein L36 -
  GCS73_RS03005 (GCS73_02975) rpsM 573637..573993 (+) 357 WP_003633056.1 30S ribosomal protein S13 -
  GCS73_RS03010 (GCS73_02980) rpsK 574015..574413 (+) 399 WP_003633055.1 30S ribosomal protein S11 -
  GCS73_RS03015 (GCS73_02985) rpsD 574430..575050 (+) 621 WP_003633050.1 30S ribosomal protein S4 -
  GCS73_RS03020 (GCS73_02990) - 575069..576061 (+) 993 WP_003633048.1 DNA-directed RNA polymerase subunit alpha -
  GCS73_RS03025 (GCS73_02995) rplQ 576079..576462 (+) 384 WP_003633046.1 50S ribosomal protein L17 -
  GCS73_RS03030 (GCS73_03000) - 577191..577451 (-) 261 WP_003633040.1 IS110 family transposase -
  GCS73_RS03035 (GCS73_03005) ssb 578064..578537 (-) 474 WP_003633038.1 single-stranded DNA-binding protein Machinery gene
  GCS73_RS17920 - 578795..578914 (+) 120 Protein_518 MerR family DNA-binding transcriptional regulator -
  GCS73_RS03040 (GCS73_03010) queF 579155..580012 (+) 858 WP_035904797.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  GCS73_RS03045 (GCS73_03015) - 580195..581292 (+) 1098 WP_223800098.1 hypothetical protein -
  GCS73_RS03050 (GCS73_03020) - 581312..581932 (+) 621 WP_003633035.1 hypothetical protein -
  GCS73_RS03055 (GCS73_03025) - 581904..583271 (-) 1368 WP_012978808.1 MFS transporter -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17580.51 Da        Isoelectric Point: 4.9833

>NTDB_id=393334 GCS73_RS03035 WP_003633038.1 578064..578537(-) (ssb) [Legionella longbeachae strain B41211CHC]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSEAWKDKATGEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGGASSSFDDIPQGQFAPSNQNFTKKQPTQQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=393334 GCS73_RS03035 WP_003633038.1 578064..578537(-) (ssb) [Legionella longbeachae strain B41211CHC]
ATGGCACGTGGAATAAACAAAGTGATACTCATTGGTAACGTAGGTGTTGATCCTGACGTACGATATTTACCTAATGGCAA
TGCAGTAACTACACTCTCAATCGCTACCAGTGAAGCATGGAAGGATAAGGCTACTGGTGAAAAACAAGAAAGAACCGAAT
GGCATCGGGTGGTTTGTTTTAATCGTTTAGGGGAAATTGCTGGCGAATATGTGCGCAAAGGATCAAAACTTTATGTCGAA
GGAAGCTTAAGAACCAGAAAATGGCAAGATCAACAAGGACAAGATAGATATACTACGGAGATTGTTGCCAACGACATACA
AATGTTAGATAGCAAAGGAGGAGCATCATCAAGTTTTGATGATATCCCACAAGGCCAATTTGCACCAAGCAACCAAAACT
TTACAAAAAAACAACCTACCCAACAAGTCCCACAAGATGCTTTTGATCAATTAGATGATGATGTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HPN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.592
  ssb Vibrio cholerae strain A1552

49.143

100

0.548
  ssb Neisseria meningitidis MC58

42.197

100

0.465
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.465

Multiple sequence alignment