Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GCU53_RS16010 Genome accession   NZ_CP045302
Coordinates   3433521..3434018 (+) Length   165 a.a.
NCBI ID   WP_152388479.1    Uniprot ID   -
Organism   Azotobacter salinestris strain KACC 13899     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3428521..3439018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU53_RS16000 uvrA 3429155..3431989 (-) 2835 WP_152388477.1 excinuclease ABC subunit UvrA -
  GCU53_RS16005 - 3432123..3433511 (+) 1389 WP_152388478.1 MFS transporter -
  GCU53_RS16010 ssb 3433521..3434018 (+) 498 WP_152388479.1 single-stranded DNA-binding protein Machinery gene
  GCU53_RS16015 - 3434475..3435359 (+) 885 WP_152388480.1 sugar nucleotide-binding protein -
  GCU53_RS16020 - 3435352..3436290 (+) 939 WP_152388481.1 NAD-dependent epimerase/dehydratase family protein -
  GCU53_RS16025 - 3436371..3437702 (-) 1332 Protein_3103 IS4 family transposase -
  GCU53_RS16030 - 3437795..3438829 (-) 1035 WP_152388482.1 IS630 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18441.32 Da        Isoelectric Point: 5.2852

>NTDB_id=393284 GCU53_RS16010 WP_152388479.1 3433521..3434018(+) (ssb) [Azotobacter salinestris strain KACC 13899]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGSRGGNSDDAPRAPRAPREPQQQAQAPQSRPAPQQDRQPPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=393284 GCU53_RS16010 WP_152388479.1 3433521..3434018(+) (ssb) [Azotobacter salinestris strain KACC 13899]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGATCCGGAAACCCGGTATCTGCCCAACGGCAA
TGCGGTCACCAACATCACCCTGGCCACTACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCAGCAGGAGCGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGCGAGTATCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGCCGTCTGCAGACCCGCAAGTGGCAGGGGCAGGATGGCCAGGATCGCTATACCACCGAGATCGTCGTCGACATGAACGG
AACCCTGCAACTGCTCGGCAGCCGCGGCGGCAACTCCGACGACGCGCCGCGCGCTCCGCGCGCCCCGCGCGAGCCGCAAC
AGCAGGCCCAGGCTCCGCAGTCGCGCCCTGCGCCGCAGCAGGACCGGCAGCCGCCGGCGCCGGACTACGATAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.624
  ssb Glaesserella parasuis strain SC1401

49.18

100

0.545
  ssb Neisseria meningitidis MC58

45.455

100

0.485
  ssb Neisseria gonorrhoeae MS11

43.956

100

0.485

Multiple sequence alignment