Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DAES_RS10465 Genome accession   NC_014844
Coordinates   2283836..2284351 (-) Length   171 a.a.
NCBI ID   WP_013514996.1    Uniprot ID   A0A949P096
Organism   Pseudodesulfovibrio aespoeensis Aspo-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2278836..2289351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAES_RS10455 (Daes_2075) - 2282115..2283002 (+) 888 WP_013514994.1 hypothetical protein -
  DAES_RS10460 (Daes_2076) - 2283030..2283713 (-) 684 WP_013514995.1 M15 family metallopeptidase -
  DAES_RS10465 (Daes_2077) ssb 2283836..2284351 (-) 516 WP_013514996.1 single-stranded DNA-binding protein Machinery gene
  DAES_RS10470 (Daes_2078) - 2284397..2284741 (-) 345 WP_013514997.1 hypothetical protein -
  DAES_RS10475 (Daes_2079) - 2284798..2285445 (-) 648 WP_013514998.1 biotin attachment protein -
  DAES_RS10480 (Daes_2080) - 2285497..2287764 (-) 2268 WP_013514999.1 carboxyl transferase domain-containing protein -
  DAES_RS10485 (Daes_2081) - 2287766..2289184 (-) 1419 WP_013515000.1 biotin carboxylase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19121.94 Da        Isoelectric Point: 5.0012

>NTDB_id=39319 DAES_RS10465 WP_013514996.1 2283836..2284351(-) (ssb) [Pseudodesulfovibrio aespoeensis Aspo-2]
MAGSMNKVILIGRLGRDPELSYTPNGQARAKFSIATDEGYRDKQTGQKVERTEWHNIVAWRQTAEFCGNYLGKGRLVLVE
GKLQTRKWQDQATGQDRYMTEIVADNVQGLDRAPDGQQAQQGGYQQNSNQQQGGYQQQAQGQGQRRQQQEPDEDLGPAFP
SEASGMDDVPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=39319 DAES_RS10465 WP_013514996.1 2283836..2284351(-) (ssb) [Pseudodesulfovibrio aespoeensis Aspo-2]
ATGGCTGGCAGTATGAACAAAGTGATTCTTATAGGCAGGCTCGGGCGCGATCCCGAACTGTCATATACGCCCAACGGACA
GGCCAGGGCCAAGTTTTCCATCGCCACGGACGAGGGCTACCGCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAGT
GGCACAACATTGTGGCCTGGCGGCAGACGGCTGAATTCTGCGGCAACTATCTCGGCAAGGGCCGTCTGGTCCTGGTGGAG
GGCAAGTTGCAGACCCGCAAGTGGCAGGATCAGGCCACTGGCCAGGACCGCTACATGACCGAGATCGTGGCCGACAACGT
GCAGGGCCTGGACCGCGCCCCTGACGGCCAGCAGGCTCAGCAGGGCGGCTATCAGCAGAACAGTAACCAGCAGCAGGGCG
GCTATCAGCAGCAGGCTCAGGGGCAGGGCCAGCGCCGCCAGCAGCAGGAGCCCGACGAAGACCTCGGTCCGGCCTTTCCC
TCCGAAGCCAGCGGCATGGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.979

100

0.491
  ssb Neisseria meningitidis MC58

43.011

100

0.468
  ssb Neisseria gonorrhoeae MS11

43.011

100

0.468
  ssb Vibrio cholerae strain A1552

45.665

100

0.462

Multiple sequence alignment