Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GCS91_RS29885 Genome accession   NZ_CP045291
Coordinates   6488990..6489556 (+) Length   188 a.a.
NCBI ID   WP_016449346.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain TR1180     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6483990..6494556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCS91_RS29875 (GCS91_29875) uvrA 6484274..6487381 (-) 3108 WP_154836172.1 excinuclease ABC subunit UvrA -
  GCS91_RS29880 (GCS91_29880) - 6487655..6488830 (+) 1176 WP_154836437.1 MFS transporter -
  GCS91_RS29885 (GCS91_29885) ssb 6488990..6489556 (+) 567 WP_016449346.1 single-stranded DNA-binding protein Machinery gene
  GCS91_RS29890 (GCS91_29890) - 6489643..6490140 (+) 498 WP_154836174.1 hypothetical protein -
  GCS91_RS29895 (GCS91_29895) - 6490467..6491921 (+) 1455 WP_227472475.1 SulP family inorganic anion transporter -
  GCS91_RS31580 - 6492318..6492626 (+) 309 WP_227468506.1 hypothetical protein -
  GCS91_RS29905 (GCS91_29905) - 6492629..6493321 (+) 693 WP_016449342.1 hypothetical protein -
  GCS91_RS29910 (GCS91_29910) paaE 6493355..6494452 (-) 1098 WP_154836176.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20403.55 Da        Isoelectric Point: 5.9554

>NTDB_id=393135 GCS91_RS29885 WP_016449346.1 6488990..6489556(+) (ssb) [Delftia tsuruhatensis strain TR1180]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=393135 GCS91_RS29885 WP_016449346.1 6488990..6489556(+) (ssb) [Delftia tsuruhatensis strain TR1180]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCACCCATGGCACCCCCGCCGCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452

Multiple sequence alignment