Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GC087_RS21150 Genome accession   NZ_CP045247
Coordinates   4393193..4393735 (-) Length   180 a.a.
NCBI ID   WP_006121517.1    Uniprot ID   -
Organism   Pantoea sp. JZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4388193..4398735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC087_RS21125 (GC087_21150) - 4388437..4388832 (+) 396 WP_033738988.1 transposase -
  GC087_RS21130 (GC087_21155) - 4389735..4390715 (-) 981 WP_039339063.1 DMT family transporter -
  GC087_RS21135 (GC087_21160) - 4390787..4391620 (-) 834 WP_054634663.1 AraC family transcriptional regulator -
  GC087_RS21140 (GC087_21165) - 4391747..4392265 (+) 519 WP_039339066.1 isochorismatase family protein -
  GC087_RS21145 (GC087_21170) - 4392359..4392931 (+) 573 WP_054634664.1 DUF1349 domain-containing protein -
  GC087_RS21150 (GC087_21175) ssb 4393193..4393735 (-) 543 WP_006121517.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GC087_RS21155 (GC087_21180) uvrA 4393960..4396788 (+) 2829 WP_033738980.1 excinuclease ABC subunit UvrA -
  GC087_RS21160 (GC087_21185) - 4397016..4398080 (+) 1065 WP_033738979.1 NAD(P)-dependent alcohol dehydrogenase -
  GC087_RS21165 (GC087_21190) - 4398119..4398442 (-) 324 WP_006121520.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19526.41 Da        Isoelectric Point: 5.2456

>NTDB_id=392937 GC087_RS21150 WP_006121517.1 4393193..4393735(-) (ssb) [Pantoea sp. JZ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAGGGQGNNNGWGQPQQPQQGNNNQFSGGAQSRPQQQP
SAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=392937 GC087_RS21150 WP_006121517.1 4393193..4393735(-) (ssb) [Pantoea sp. JZ2]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACCTCTGAGAGCTGGCGCGACAAGCAGACCGGTGAGAACAAAGAGATTACCG
AATGGCACCGTGTCGTGCTGTTTGGCAAACTGGCAGAAGTGGCGGGCGAATACCTGCGTAAAGGTTCTCAGGTGTATATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGCGGTCAGGAACGTTACACCACGGAGGTGGTTGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGGCGGCGGTCAGGGCAACAACAACGGTT
GGGGCCAGCCTCAGCAACCGCAGCAGGGCAATAACAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGCCC
AGCGCTCCGGCCAGCAACAATAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.739
  ssb Glaesserella parasuis strain SC1401

58.115

100

0.617
  ssb Neisseria meningitidis MC58

46.409

100

0.467
  ssb Neisseria gonorrhoeae MS11

46.409

100

0.467

Multiple sequence alignment