Detailed information NTG0392662

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GBK02_RS05355
• Genome accession: NZ_CP045202
• Coordinates: 1092806..1094155 (+)
• Length: 449 a.a.
• NCBI ID: WP_203468711.1
• Uniprot ID: A0A974SUN5
• Organism: Dechloromonas sp. TW-R-39-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1087806..1099155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBK02_RS05340 (GBK02_05320)	-	1089058..1090905 (+)	1848	WP_203468708.1	ATP-binding protein	-
GBK02_RS05345 (GBK02_05325)	-	1091026..1091241 (+)	216	WP_203468709.1	PP0621 family protein	-
GBK02_RS05350 (GBK02_05330)	-	1091241..1092848 (+)	1608	WP_203468710.1	nitrogen regulation protein NR(II)	-
GBK02_RS05355 (GBK02_05335)	pilR	1092806..1094155 (+)	1350	WP_203468711.1	sigma-54 dependent transcriptional regulator	Regulator
GBK02_RS05360 (GBK02_05340)	ampD	1094152..1094721 (+)	570	WP_203468712.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
GBK02_RS05365 (GBK02_05345)	-	1094698..1095858 (-)	1161	WP_203468713.1	pyridoxal phosphate-dependent aminotransferase	-
GBK02_RS05370 (GBK02_05350)	-	1095919..1097763 (-)	1845	WP_203468714.1	phosphoenolpyruvate carboxykinase (GTP)	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49272.57 Da
• Isoelectric Point: 5.5447

>NTDB_id=392662 GBK02_RS05355 WP_203468711.1 1092806..1094155(+) (pilR) [Dechloromonas sp. TW-R-39-2]
MSLARSERRSADALNRVLVVDDEPDIRELIDLTLLRMGLATVCVGSVGEAKKALESGAFNLCLTDMRLPDGEGLEIVQHI
AEHHGRLPVAVITAFGSAENAVAALKAGAFDYLTKPVGLDQLRALVKSALRLPEAVRGDDPLLALVGNSPCMQHVRTMID
KLARSQAPIYISGESGSGKELAARLIHARSARHAGAFVPVNCGAIPEMLMESEFFGYRKGAFTGAETDRDGFFQAANGGT
LFLDEVADLPLAMQVKLLRAIQEKRVRKVGNTLEEPVDVRIVCATHKNLRDCVDRGAFRQDLYYRLNVIELRMPPLRERA
EDIAPLVAAILQRLFGATHPFLSAAALRALEFYPFPGNVRELENILERATALCSGEQIEVDDLHLEPEDLVEESGGRGSE
TLDAYLNRLERQAILEALQTTEGNRTAAARLLGVTFRSMRYRLERLGIE

Nucleotide

• Length: 1350 bp

>NTDB_id=392662 GBK02_RS05355 WP_203468711.1 1092806..1094155(+) (pilR) [Dechloromonas sp. TW-R-39-2]
GTGTCACTTGCCCGAAGTGAGCGACGGTCCGCTGATGCGTTGAACCGGGTTTTGGTGGTTGATGACGAGCCGGATATCCG
TGAGCTGATCGATCTGACGCTATTGCGCATGGGCTTGGCTACGGTATGTGTCGGCTCGGTCGGTGAGGCGAAAAAGGCAC
TCGAATCGGGGGCCTTTAATCTCTGCCTGACCGATATGCGTCTGCCTGATGGCGAGGGGCTGGAAATTGTCCAGCACATT
GCCGAGCACCACGGTCGACTGCCGGTTGCCGTGATTACTGCTTTCGGGAGCGCAGAAAATGCAGTCGCGGCACTCAAGGC
CGGTGCGTTTGATTACCTGACCAAACCGGTTGGCCTGGATCAGTTGCGGGCCTTGGTCAAATCGGCCCTGCGCCTGCCCG
AGGCGGTGCGTGGAGATGATCCGTTGCTTGCCTTGGTGGGCAATTCGCCCTGCATGCAGCACGTCCGGACAATGATCGAC
AAATTGGCCCGCAGCCAGGCGCCGATCTACATTTCGGGTGAGTCCGGTAGTGGCAAGGAACTGGCCGCTCGCCTGATCCA
TGCCCGCAGTGCCCGGCATGCCGGGGCCTTTGTCCCGGTCAACTGCGGCGCAATCCCGGAAATGCTGATGGAGAGCGAAT
TCTTCGGTTATCGCAAGGGCGCGTTCACTGGGGCAGAAACCGACCGTGACGGTTTTTTCCAGGCGGCCAATGGCGGGACG
TTGTTTCTTGACGAAGTGGCTGATTTGCCGTTGGCCATGCAGGTCAAGTTGTTGCGCGCCATTCAGGAAAAACGTGTGCG
CAAAGTGGGCAACACACTCGAAGAGCCTGTCGATGTCCGCATTGTCTGTGCGACGCACAAAAATCTGCGCGATTGTGTCG
ACCGGGGTGCTTTCCGCCAGGATCTTTATTACCGCCTGAACGTGATCGAGCTGCGCATGCCTCCTTTGCGCGAGCGAGCC
GAAGATATTGCTCCGCTGGTTGCTGCCATTTTGCAGCGGTTGTTCGGTGCAACTCATCCGTTTTTGTCTGCAGCTGCGTT
GCGAGCCTTGGAGTTTTATCCGTTCCCGGGAAATGTTCGTGAACTGGAGAATATCCTCGAGCGGGCCACCGCACTTTGCT
CGGGAGAGCAAATCGAAGTGGATGATCTTCATCTTGAACCGGAGGATTTGGTTGAAGAGAGTGGCGGGCGAGGCAGTGAG
ACGCTGGATGCTTATCTGAATCGGCTTGAGCGCCAGGCTATTCTCGAAGCCTTGCAAACAACAGAGGGCAACCGAACGGC
GGCTGCCCGTTTGCTCGGTGTGACTTTCCGTTCCATGCGCTACCGCCTGGAACGCTTGGGGATCGAATGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (145-311)

• Bacterial regulatory protein, Fis family (HTH_8) (408-445)

• Response regulator receiver domain (Response_reg) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.225	99.109	0.597
pilR	Acinetobacter baumannii strain A118	44.348	100	0.454
luxO	Vibrio cholerae strain A1552	39.243	94.209	0.37