Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GBK02_RS04310 Genome accession   NZ_CP045202
Coordinates   887092..887565 (+) Length   157 a.a.
NCBI ID   WP_203468522.1    Uniprot ID   -
Organism   Dechloromonas sp. TW-R-39-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 882092..892565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS04295 (GBK02_04290) uvrA 882166..884991 (-) 2826 WP_203468520.1 excinuclease ABC subunit UvrA -
  GBK02_RS04300 (GBK02_04295) - 885097..885714 (-) 618 WP_203468521.1 hypothetical protein -
  GBK02_RS04305 (GBK02_04300) - 885871..887079 (+) 1209 WP_239003166.1 MFS transporter -
  GBK02_RS04310 (GBK02_04305) ssb 887092..887565 (+) 474 WP_203468522.1 single-stranded DNA-binding protein Machinery gene
  GBK02_RS04315 (GBK02_04310) - 887718..888704 (-) 987 WP_203468523.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  GBK02_RS04320 (GBK02_04315) - 888701..889321 (-) 621 WP_203468524.1 DUF6088 family protein -
  GBK02_RS04325 (GBK02_04320) - 889753..890817 (+) 1065 WP_203468525.1 GDP-L-fucose synthase -
  GBK02_RS04330 (GBK02_04325) - 890820..891521 (+) 702 WP_203468526.1 nucleotidyltransferase domain-containing protein -
  GBK02_RS04335 (GBK02_04330) - 891505..891936 (+) 432 WP_203468527.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17048.99 Da        Isoelectric Point: 5.9587

>NTDB_id=392658 GBK02_RS04310 WP_203468522.1 887092..887565(+) (ssb) [Dechloromonas sp. TW-R-39-2]
MASVNKVILVGNLGKDPEVRYTASGEAMCNFTLATTESWRDKASGEKKELTEWHRISFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKWTDKDGQERYTTEIRGAEMTMLGSRQGMGAPASSGGGGGGGYDNEPDYSPAPARANKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=392658 GBK02_RS04310 WP_203468522.1 887092..887565(+) (ssb) [Dechloromonas sp. TW-R-39-2]
ATGGCATCGGTAAACAAGGTGATTCTCGTCGGTAACCTGGGCAAGGACCCGGAAGTTCGCTACACCGCCAGCGGCGAAGC
CATGTGCAACTTCACCCTGGCCACGACCGAATCCTGGCGCGACAAGGCGAGCGGCGAAAAGAAGGAACTGACCGAATGGC
ACCGCATTTCCTTCTTCGGCAAGCTGGCTGAAATCGCCGGCCAATACCTCAAAAAAGGCTCGCAGGTTTATGTCGAAGGC
AGCCTGCGCACCCGCAAATGGACCGACAAGGATGGCCAGGAGCGTTACACCACCGAAATTCGCGGTGCTGAAATGACCAT
GCTTGGCTCGCGTCAAGGCATGGGCGCCCCGGCCTCGTCGGGCGGCGGCGGTGGCGGCGGTTACGACAACGAACCGGATT
ACTCGCCGGCCCCGGCCCGCGCCAACAAGCCGAAACCTTCGTTCGACGATCTCGGCGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.573
  ssb Vibrio cholerae strain A1552

50.847

100

0.573
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.522
  ssb Neisseria meningitidis MC58

45.714

100

0.51

Multiple sequence alignment