Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7D01_RS10715 Genome accession   NZ_CP045200
Coordinates   2182249..2182773 (-) Length   174 a.a.
NCBI ID   WP_215227554.1    Uniprot ID   A0A975MCY8
Organism   Erythrobacter sp. 3-20A1M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2177249..2187773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D01_RS15570 (F7D01_10630) - 2177277..2177471 (+) 195 WP_371819597.1 HGGxSTG domain-containing protein -
  F7D01_RS10690 (F7D01_10635) - 2177468..2178079 (-) 612 WP_215227550.1 hypothetical protein -
  F7D01_RS10700 (F7D01_10645) - 2178821..2179624 (+) 804 WP_215227551.1 DUF1134 domain-containing protein -
  F7D01_RS10705 (F7D01_10650) - 2179713..2180897 (+) 1185 WP_215227552.1 aromatic amino acid transaminase -
  F7D01_RS10710 (F7D01_10655) - 2180949..2182124 (-) 1176 WP_215227553.1 Gfo/Idh/MocA family protein -
  F7D01_RS10715 (F7D01_10660) ssb 2182249..2182773 (-) 525 WP_215227554.1 single-stranded DNA-binding protein Machinery gene
  F7D01_RS10720 (F7D01_10665) - 2182789..2184633 (-) 1845 WP_215227555.1 ferrous iron transporter B -
  F7D01_RS10725 (F7D01_10670) - 2184630..2184884 (-) 255 WP_215227556.1 FeoA family protein -
  F7D01_RS10730 (F7D01_10675) - 2184939..2185601 (-) 663 WP_215227557.1 COQ9 family protein -
  F7D01_RS10735 (F7D01_10680) - 2185636..2186250 (-) 615 WP_251566748.1 ankyrin repeat domain-containing protein -
  F7D01_RS10740 (F7D01_10685) - 2186352..2186936 (+) 585 WP_251566750.1 SCO family protein -
  F7D01_RS10745 (F7D01_10690) - 2186946..2187380 (+) 435 WP_215227560.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18087.58 Da        Isoelectric Point: 4.7980

>NTDB_id=392642 F7D01_RS10715 WP_215227554.1 2182249..2182773(-) (ssb) [Erythrobacter sp. 3-20A1M]
MAGSLNKVMLIGNLGQDPEVRSFQNGGRVCNLRIATSENWKDKNTGERKEQTEWHSVAIFSDGLINVCENYLRKGSKVFI
EGKLQTRKWQDQSGNDRYSTEVVLRGFDGTLTMLDGRGEGGGGGGGGNYGGGGQRSGGGGGWNQGGGGQGGGSGGGASSG
GGSDYDDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=392642 F7D01_RS10715 WP_215227554.1 2182249..2182773(-) (ssb) [Erythrobacter sp. 3-20A1M]
ATGGCAGGCAGCCTCAACAAGGTCATGCTGATCGGCAATCTGGGGCAGGACCCGGAAGTGCGCAGTTTCCAGAACGGCGG
GCGGGTGTGCAATCTGCGCATCGCCACCAGCGAGAACTGGAAGGACAAGAACACCGGAGAGCGCAAGGAACAGACCGAAT
GGCATTCGGTCGCGATCTTCTCCGACGGGTTGATCAACGTATGCGAGAACTACCTGCGCAAGGGCAGCAAGGTCTTCATC
GAGGGCAAGCTGCAGACGCGCAAGTGGCAGGATCAGTCGGGCAACGACCGCTATTCGACCGAAGTGGTGCTGCGCGGCTT
CGACGGCACGCTGACGATGCTCGACGGCCGCGGTGAAGGCGGCGGCGGTGGTGGCGGCGGCAATTATGGCGGCGGGGGCC
AACGCTCCGGCGGCGGGGGCGGCTGGAACCAGGGCGGTGGCGGCCAAGGCGGTGGATCGGGTGGCGGTGCGTCGTCCGGC
GGCGGCTCGGATTACGACGATTTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

100

0.511
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.5
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.379
  ssb Neisseria meningitidis MC58

36.872

100

0.379

Multiple sequence alignment