Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GA693_RS11270 Genome accession   NZ_CP045198
Coordinates   2269251..2269817 (-) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2260410..2269817 2269251..2269817 within 0


Gene organization within MGE regions


Location: 2260410..2269817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS11225 - 2260410..2261500 (-) 1091 Protein_2098 IS3 family transposase -
  GA693_RS11230 - 2261618..2261833 (-) 216 WP_019385588.1 helix-turn-helix domain-containing protein -
  GA693_RS11235 - 2261930..2262418 (+) 489 WP_168382385.1 hypothetical protein -
  GA693_RS11240 - 2262495..2262914 (-) 420 WP_104988039.1 hypothetical protein -
  GA693_RS11245 - 2262916..2265039 (-) 2124 WP_104988038.1 integrase -
  GA693_RS11250 - 2265032..2266117 (-) 1086 Protein_2103 site-specific integrase -
  GA693_RS11255 - 2266195..2267327 (+) 1133 WP_223155595.1 IS3-like element ISAba14 family transposase -
  GA693_RS11260 - 2267389..2267874 (-) 486 Protein_2105 site-specific integrase -
  GA693_RS11265 - 2267871..2269094 (-) 1224 WP_104988036.1 site-specific integrase -
  GA693_RS11270 ssb 2269251..2269817 (-) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=392621 GA693_RS11270 WP_005180729.1 2269251..2269817(-) (ssb) [Acinetobacter indicus strain TQ23]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=392621 GA693_RS11270 WP_005180729.1 2269251..2269817(-) (ssb) [Acinetobacter indicus strain TQ23]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment