Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GB851_RS09930 Genome accession   NZ_CP045141
Coordinates   1908762..1909070 (+) Length   102 a.a.
NCBI ID   WP_003788664.1    Uniprot ID   A0AAX2J377
Organism   Kingella kingae strain F41215CHC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1903762..1914070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS09930 (GB851_10125) comE 1908762..1909070 (+) 309 WP_003788664.1 ComEA family DNA-binding protein Machinery gene
  GB851_RS09935 (GB851_10130) rpsB 1909292..1910017 (+) 726 WP_003792037.1 30S ribosomal protein S2 -
  GB851_RS09940 (GB851_10135) tsf 1910102..1910956 (+) 855 WP_003792035.1 translation elongation factor Ts -
  GB851_RS09945 (GB851_10140) - 1911009..1911254 (+) 246 WP_223877626.1 FAD-dependent monooxygenase -
  GB851_RS09950 (GB851_10145) - 1911224..1911565 (+) 342 WP_223877627.1 HAD domain-containing protein -
  GB851_RS09955 (GB851_10150) uvrC 1911601..1913433 (+) 1833 WP_038329540.1 excinuclease ABC subunit UvrC -
  GB851_RS09960 (GB851_10155) - 1913485..1913970 (-) 486 WP_019390407.1 PIN domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10803.69 Da        Isoelectric Point: 10.6245

>NTDB_id=392295 GB851_RS09930 WP_003788664.1 1908762..1909070(+) (comE) [Kingella kingae strain F41215CHC]
MLKKIVLSIISLGVTTLSFAQLNINTATADELDKQLNGIGPAKAKAIVEYREKNGAFKSVDDLASVPGIKMATVNKLREQ
ATVGNVAAKPVTTKAQPITKPK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=392295 GB851_RS09930 WP_003788664.1 1908762..1909070(+) (comE) [Kingella kingae strain F41215CHC]
ATGTTAAAGAAAATAGTGTTGTCTATTATTTCATTAGGTGTTACCACATTAAGTTTTGCCCAATTAAATATTAATACTGC
AACGGCTGATGAATTGGATAAGCAACTCAATGGTATTGGTCCTGCCAAGGCAAAGGCGATTGTTGAATACCGTGAAAAAA
ATGGTGCATTCAAATCGGTTGATGATTTAGCTTCTGTGCCAGGTATCAAAATGGCTACGGTGAATAAGTTGCGTGAACAA
GCAACTGTGGGAAATGTTGCGGCAAAACCTGTTACAACTAAAGCACAACCCATTACGAAGCCTAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

80.392

0.382

Multiple sequence alignment