Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GB851_RS07620 Genome accession   NZ_CP045141
Coordinates   1467509..1468030 (-) Length   173 a.a.
NCBI ID   WP_003791169.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1462509..1473030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS07595 (GB851_07795) - 1462978..1463865 (+) 888 WP_164538265.1 transferrin-binding protein-like solute binding protein -
  GB851_RS07600 (GB851_07800) - 1463943..1464428 (-) 486 WP_223877596.1 DUF4149 domain-containing protein -
  GB851_RS07605 (GB851_07805) - 1464519..1465304 (-) 786 WP_003787475.1 cytochrome c1 -
  GB851_RS07610 (GB851_07810) - 1465318..1466670 (-) 1353 WP_003791167.1 cytochrome bc complex cytochrome b subunit -
  GB851_RS07615 (GB851_07815) petA 1466688..1467272 (-) 585 WP_038304023.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  GB851_RS07620 (GB851_07820) ssb 1467509..1468030 (-) 522 WP_003791169.1 single-stranded DNA-binding protein Machinery gene
  GB851_RS07625 (GB851_07825) - 1468033..1469418 (-) 1386 WP_164538266.1 MFS transporter -
  GB851_RS07630 (GB851_07830) - 1469560..1470783 (-) 1224 WP_032828289.1 sugar MFS transporter -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19495.75 Da        Isoelectric Point: 6.4775

>NTDB_id=392288 GB851_RS07620 WP_003791169.1 1467509..1468030(-) (ssb) [Kingella kingae strain F41215CHC]
MSLNKVMLIGRLGRDPETRYMPNGDAVCNFSVATSENWTDRNNGQRQERTEWHNITMYRRQAEIAAQYLRKGSQVYLEGK
IQSRKYTDKTGAERTAYDIVCDVMRMLDSKNGQQGGSSHVPYDNEYSAAPPPVRQQPAPAAPASEPPVAPQRRESKPVAP
VEPVENIDEDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=392288 GB851_RS07620 WP_003791169.1 1467509..1468030(-) (ssb) [Kingella kingae strain F41215CHC]
ATGTCATTAAATAAAGTGATGTTGATTGGACGTTTGGGGCGCGACCCCGAAACACGCTATATGCCCAATGGCGATGCGGT
GTGCAATTTTTCGGTAGCGACCAGTGAAAACTGGACAGACCGCAACAATGGTCAGCGTCAAGAACGCACCGAGTGGCACA
ATATTACGATGTATCGCCGCCAAGCCGAGATTGCCGCGCAATATTTGCGTAAGGGCAGCCAAGTGTATTTGGAAGGCAAA
ATCCAATCGCGCAAATACACCGACAAAACAGGTGCAGAACGCACCGCATACGACATTGTGTGCGATGTCATGCGTATGTT
GGACAGCAAAAACGGTCAGCAAGGTGGCAGCAGCCATGTTCCTTATGATAACGAATACAGTGCCGCACCGCCGCCAGTAC
GTCAGCAGCCTGCACCTGCCGCACCAGCCAGCGAACCGCCAGTTGCACCACAACGTCGCGAAAGTAAACCTGTTGCACCA
GTTGAACCCGTAGAAAACATTGATGAAGACATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

63.536

100

0.665
  ssb Neisseria meningitidis MC58

62.431

100

0.653
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.474
  ssb Vibrio cholerae strain A1552

43.889

100

0.457

Multiple sequence alignment