Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GA636_RS04000 Genome accession   NZ_CP045135
Coordinates   841153..841719 (+) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 842135..855702 841153..841719 flank 416


Gene organization within MGE regions


Location: 841153..855702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS04000 ssb 841153..841719 (+) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene
  GA636_RS15240 - 841875..842084 (+) 210 Protein_769 site-specific integrase -
  GA636_RS04010 - 842135..842839 (-) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  GA636_RS04015 - 842903..844183 (-) 1281 WP_005237495.1 cation transporter -
  GA636_RS04020 cadR 844273..844665 (+) 393 WP_000550240.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  GA636_RS04025 - 844851..846155 (+) 1305 WP_160232240.1 IS4 family transposase -
  GA636_RS04030 - 846137..846322 (+) 186 Protein_774 hypothetical protein -
  GA636_RS04035 - 846364..846666 (-) 303 WP_001140620.1 helix-turn-helix domain-containing protein -
  GA636_RS04040 - 846659..847015 (-) 357 WP_004668307.1 type II toxin-antitoxin system RelE/ParE family toxin -
  GA636_RS04045 - 847538..848509 (-) 972 WP_005176780.1 GlxA family transcriptional regulator -
  GA636_RS04050 - 848642..849526 (+) 885 WP_160232241.1 MBL fold metallo-hydrolase -
  GA636_RS04055 - 849611..850153 (+) 543 WP_004637127.1 cysteine hydrolase family protein -
  GA636_RS04060 - 850228..850521 (-) 294 WP_000221358.1 type II toxin-antitoxin system RelE family toxin -
  GA636_RS04065 - 850511..850756 (-) 246 WP_160232242.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  GA636_RS04070 - 850924..852252 (+) 1329 Protein_782 ISNCY family transposase -
  GA636_RS04075 - 852331..852624 (-) 294 WP_000221358.1 type II toxin-antitoxin system RelE family toxin -
  GA636_RS04080 - 852614..852859 (-) 246 WP_160232242.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  GA636_RS04085 - 853242..854389 (+) 1148 Protein_785 IS3-like element ISAba14 family transposase -
  GA636_RS04090 - 854451..854930 (+) 480 Protein_786 IS982-like element ISAcsp2 family transposase -
  GA636_RS04095 - 854993..855702 (+) 710 Protein_787 IS6-like element IS1006 family transposase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=392214 GA636_RS04000 WP_005180729.1 841153..841719(+) (ssb) [Acinetobacter indicus strain XG01]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=392214 GA636_RS04000 WP_005180729.1 841153..841719(+) (ssb) [Acinetobacter indicus strain XG01]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment