Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GA721_RS00840 Genome accession   NZ_CP045131
Coordinates   186523..187062 (+) Length   179 a.a.
NCBI ID   WP_160242723.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 187218..220529 186523..187062 flank 156


Gene organization within MGE regions


Location: 186523..220529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS00840 ssb 186523..187062 (+) 540 WP_160242723.1 single-stranded DNA-binding protein Machinery gene
  GA721_RS00845 - 187218..188444 (+) 1227 WP_171431572.1 site-specific integrase -
  GA721_RS00850 - 188431..189993 (+) 1563 WP_410169779.1 site-specific integrase -
  GA721_RS00855 - 189986..192109 (+) 2124 WP_160242726.1 integrase -
  GA721_RS00860 - 192111..192530 (+) 420 WP_104988039.1 hypothetical protein -
  GA721_RS00865 - 192607..193095 (-) 489 WP_168382385.1 hypothetical protein -
  GA721_RS00870 - 193192..193407 (+) 216 WP_019385588.1 helix-turn-helix domain-containing protein -
  GA721_RS00875 - 193525..194615 (+) 1091 Protein_172 IS3 family transposase -
  GA721_RS00880 - 194650..194871 (-) 222 WP_005180724.1 hypothetical protein -
  GA721_RS00885 - 194895..195815 (-) 921 WP_160242727.1 copper resistance protein B -
  GA721_RS00890 - 195802..197715 (-) 1914 WP_160242728.1 copper resistance system multicopper oxidase -
  GA721_RS00895 - 197805..198101 (-) 297 WP_045796009.1 hypothetical protein -
  GA721_RS00900 - 198250..198930 (+) 681 WP_005180717.1 heavy metal response regulator transcription factor -
  GA721_RS00905 - 198923..200323 (+) 1401 WP_160242729.1 heavy metal sensor histidine kinase -
  GA721_RS00910 - 200362..201645 (-) 1284 WP_160242730.1 MgtC/SapB family protein -
  GA721_RS00915 - 201642..204017 (-) 2376 WP_160242731.1 heavy metal translocating P-type ATPase -
  GA721_RS00920 - 204029..204679 (-) 651 WP_160242732.1 methyltransferase family protein -
  GA721_RS00925 - 204700..204948 (-) 249 WP_004695740.1 DUF2933 domain-containing protein -
  GA721_RS00930 - 204975..205406 (-) 432 WP_004695737.1 hypothetical protein -
  GA721_RS00935 - 206132..206374 (-) 243 WP_004281876.1 DUF2789 family protein -
  GA721_RS00940 - 206726..207106 (+) 381 WP_004681441.1 copper resistance protein CopC -
  GA721_RS00945 - 207171..208052 (+) 882 WP_005180708.1 copper resistance D family protein -
  GA721_RS00950 - 208521..208715 (+) 195 WP_004281879.1 heavy-metal-associated domain-containing protein -
  GA721_RS00955 - 208894..211371 (+) 2478 Protein_188 heavy metal translocating P-type ATPase -
  GA721_RS00960 - 211742..212674 (-) 933 WP_160243674.1 IS5 family transposase -
  GA721_RS00965 - 213751..215562 (+) 1812 WP_034583971.1 copper resistance system multicopper oxidase -
  GA721_RS00970 - 215549..216538 (+) 990 WP_160242733.1 copper resistance protein B -
  GA721_RS00975 - 216770..218095 (+) 1326 WP_082179799.1 ISNCY family transposase -
  GA721_RS00980 - 218205..218450 (+) 246 WP_160232258.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  GA721_RS00985 - 218440..218733 (+) 294 WP_000221358.1 type II toxin-antitoxin system RelE family toxin -
  GA721_RS00990 - 218862..219191 (-) 330 WP_004641881.1 four-helix bundle copper-binding protein -
  GA721_RS00995 - 219439..220529 (+) 1091 Protein_196 IS3 family transposase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19778.56 Da        Isoelectric Point: 6.4820

>NTDB_id=392156 GA721_RS00840 WP_160242723.1 186523..187062(+) (ssb) [Acinetobacter indicus strain TQ18]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQSEQGDNGFSQPRFNNNQGGYAPQAQGGFNNNNAGGGYGNQGGYQQP
KPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=392156 GA721_RS00840 WP_160242723.1 186523..187062(+) (ssb) [Acinetobacter indicus strain TQ18]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAAGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGCT
ATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCCGGTGGTGGTTATGGCAACCAGGGTGGTTATCAGCAACCG
AAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.005

100

0.542
  ssb Vibrio cholerae strain A1552

46.032

100

0.486
  ssb Neisseria gonorrhoeae MS11

40

100

0.402
  ssb Neisseria meningitidis MC58

39.444

100

0.397

Multiple sequence alignment