Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GA646_RS01725 Genome accession   NZ_CP045127
Coordinates   194026..194592 (+) Length   188 a.a.
NCBI ID   WP_045795510.1    Uniprot ID   A0AAW8Z9U3
Organism   Acinetobacter indicus strain XG03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189026..199592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS01710 tenA 190430..191107 (-) 678 WP_104470283.1 thiaminase II -
  GA646_RS01715 - 191375..192457 (+) 1083 WP_005180731.1 DUF475 domain-containing protein -
  GA646_RS01720 - 192610..193974 (+) 1365 WP_104470282.1 MFS transporter -
  GA646_RS01725 ssb 194026..194592 (+) 567 WP_045795510.1 single-stranded DNA-binding protein Machinery gene
  GA646_RS01730 ahpC 194835..195398 (+) 564 WP_016658414.1 alkyl hydroperoxide reductase subunit C -
  GA646_RS01735 - 195599..196474 (+) 876 WP_160255412.1 pirin family protein -
  GA646_RS01740 - 196908..198206 (+) 1299 WP_160255413.1 FAD-dependent oxidoreductase -
  GA646_RS01745 - 198210..199034 (+) 825 WP_075167307.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20667.41 Da        Isoelectric Point: 6.4819

>NTDB_id=392078 GA646_RS01725 WP_045795510.1 194026..194592(+) (ssb) [Acinetobacter indicus strain XG03]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFNQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=392078 GA646_RS01725 WP_045795510.1 194026..194592(+) (ssb) [Acinetobacter indicus strain XG03]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCGGGTCGTCAGCAAGGTGAGCAGGGCGATAACGGTTTTAATCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAGGCTCAAGGCGGTTTTAACAACAATAATGCCGGTGGTGGTTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.646

100

0.548
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment