Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ASTEX_RS15395 Genome accession   NC_014817
Coordinates   797612..798130 (-) Length   172 a.a.
NCBI ID   WP_013480558.1    Uniprot ID   -
Organism   Asticcacaulis excentricus CB 48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 792612..803130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASTEX_RS15375 (Astex_3098) - 792713..793156 (+) 444 WP_013480554.1 hypothetical protein -
  ASTEX_RS15380 (Astex_3099) - 793257..794090 (-) 834 WP_013480555.1 peptidylprolyl isomerase -
  ASTEX_RS15385 (Astex_3100) coaD 794090..794581 (-) 492 WP_013480556.1 pantetheine-phosphate adenylyltransferase -
  ASTEX_RS15390 (Astex_3101) gyrA 794617..797373 (-) 2757 WP_013480557.1 DNA gyrase subunit A -
  ASTEX_RS15395 (Astex_3102) ssb 797612..798130 (-) 519 WP_013480558.1 single-stranded DNA-binding protein Machinery gene
  ASTEX_RS15400 (Astex_3103) - 798266..798712 (-) 447 WP_013480559.1 hypothetical protein -
  ASTEX_RS15405 (Astex_3104) - 798723..799373 (-) 651 WP_013480560.1 hypothetical protein -
  ASTEX_RS15410 (Astex_3105) - 799419..802319 (-) 2901 WP_013480561.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18465.35 Da        Isoelectric Point: 5.3111

>NTDB_id=39203 ASTEX_RS15395 WP_013480558.1 797612..798130(-) (ssb) [Asticcacaulis excentricus CB 48]
MAGSVNKVIIIGNLGKDPEIRTLNSGERVANLTVATSEQWRDKMTGERKEKTEWHRVVIFNDNLAKIAEQYLRKGSTVYL
EGSLQTRKWTDQQGVEKYTTEIVLQRFNGNLTLLGGRGDSGGGSSSAGGYDQGGGYGGGFDDGGYGAPASSGPKAQGSGP
KQNFDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=39203 ASTEX_RS15395 WP_013480558.1 797612..798130(-) (ssb) [Asticcacaulis excentricus CB 48]
ATGGCGGGCTCGGTCAACAAGGTCATCATTATCGGCAATCTGGGTAAAGACCCAGAAATCCGCACGCTCAATTCGGGCGA
GCGTGTCGCCAATCTGACAGTGGCCACCTCGGAACAGTGGCGCGACAAGATGACGGGTGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTTATCTTCAATGACAACCTGGCCAAGATCGCCGAGCAGTACCTGCGCAAGGGCTCGACCGTCTATCTC
GAAGGTTCGCTGCAAACGCGCAAGTGGACCGATCAGCAGGGCGTCGAAAAGTACACCACCGAAATCGTGCTGCAACGCTT
CAACGGCAATCTGACGCTTCTGGGCGGCCGTGGCGACAGCGGCGGCGGTTCGTCGTCTGCGGGCGGTTATGATCAGGGCG
GCGGCTATGGCGGCGGTTTTGACGACGGCGGCTACGGGGCCCCGGCCTCTTCGGGCCCGAAGGCGCAGGGCTCCGGCCCC
AAGCAGAACTTCGATCTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.543

100

0.541
  ssb Vibrio cholerae strain A1552

52.299

100

0.529
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.43
  ssb Neisseria meningitidis MC58

40.782

100

0.424

Multiple sequence alignment