Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GA645_RS03390 Genome accession   NZ_CP045118
Coordinates   702265..702762 (+) Length   165 a.a.
NCBI ID   WP_152219934.1    Uniprot ID   -
Organism   Pseudomonas sp. SCB32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 697265..707762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS03380 uvrA 697809..700643 (-) 2835 WP_152219930.1 excinuclease ABC subunit UvrA -
  GA645_RS03385 - 700858..702246 (+) 1389 WP_152219932.1 MFS transporter -
  GA645_RS03390 ssb 702265..702762 (+) 498 WP_152219934.1 single-stranded DNA-binding protein Machinery gene
  GA645_RS03395 - 702940..703128 (+) 189 WP_152219936.1 hypothetical protein -
  GA645_RS03400 cobJ 703200..704849 (-) 1650 WP_152219938.1 precorrin-3B C(17)-methyltransferase -
  GA645_RS03405 - 704849..705589 (-) 741 WP_152219940.1 precorrin-2 C(20)-methyltransferase -
  GA645_RS03410 - 705589..706215 (-) 627 WP_152219942.1 precorrin-8X methylmutase -
  GA645_RS03415 cobG 706208..707554 (-) 1347 WP_152219944.1 precorrin-3B synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18318.25 Da        Isoelectric Point: 5.2781

>NTDB_id=392024 GA645_RS03390 WP_152219934.1 702265..702762(+) (ssb) [Pseudomonas sp. SCB32]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAPRPAPQQQSQPAPQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=392024 GA645_RS03390 WP_152219934.1 702265..702762(+) (ssb) [Pseudomonas sp. SCB32]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTGGGTAACGTCGGTGGCGATCCGGAAACCCGTTACATGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAAATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGTACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACAAGTACACCACCGAAATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTCGGCGGCCGTCCGGGTGCCGGTGGTGACGACGCTCCGCGCGCCCCGCGCGAGCCGCAACAGCGTC
CGCAGCAGGCGCCGCGTCCGGCCCCGCAGCAGCAGTCCCAGCCCGCGCCGCAGCCGGCTCCGGACTACGACAGCTTCGAC
GACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.6
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.558
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.491
  ssb Neisseria meningitidis MC58

45.198

100

0.485

Multiple sequence alignment