Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ASTEX_RS01515 | Genome accession | NC_014816 |
| Coordinates | 332645..333127 (-) | Length | 160 a.a. |
| NCBI ID | WP_013477840.1 | Uniprot ID | E8RPM9 |
| Organism | Asticcacaulis excentricus CB 48 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 324506..356328 | 332645..333127 | within | 0 |
Gene organization within MGE regions
Location: 324506..356328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASTEX_RS01445 (Astex_0295) | - | 324506..325738 (-) | 1233 | WP_013477827.1 | divergent polysaccharide deacetylase family protein | - |
| ASTEX_RS01450 (Astex_0296) | - | 325982..326419 (-) | 438 | WP_013477828.1 | hypothetical protein | - |
| ASTEX_RS01455 (Astex_0297) | - | 326400..326879 (-) | 480 | WP_013477829.1 | Panacea domain-containing protein | - |
| ASTEX_RS01460 (Astex_0298) | - | 327309..327704 (+) | 396 | WP_013477830.1 | hypothetical protein | - |
| ASTEX_RS01465 (Astex_0299) | - | 327697..327996 (+) | 300 | WP_013477831.1 | hypothetical protein | - |
| ASTEX_RS01470 (Astex_0300) | - | 328019..329089 (-) | 1071 | WP_013477832.1 | tyrosine-type recombinase/integrase | - |
| ASTEX_RS01475 (Astex_0301) | - | 329071..329322 (-) | 252 | WP_013477833.1 | hypothetical protein | - |
| ASTEX_RS01480 (Astex_0302) | - | 329319..329708 (-) | 390 | WP_013477834.1 | hypothetical protein | - |
| ASTEX_RS01485 (Astex_0303) | - | 329705..330382 (-) | 678 | WP_013477835.1 | hypothetical protein | - |
| ASTEX_RS01490 (Astex_0304) | - | 330382..330933 (-) | 552 | WP_013477836.1 | hypothetical protein | - |
| ASTEX_RS01495 (Astex_0305) | - | 330923..331459 (-) | 537 | WP_013477837.1 | hypothetical protein | - |
| ASTEX_RS19140 (Astex_0306) | - | 331456..332007 (-) | 552 | WP_013477838.1 | hypothetical protein | - |
| ASTEX_RS01510 (Astex_0307) | - | 332009..332293 (-) | 285 | WP_013477839.1 | hypothetical protein | - |
| ASTEX_RS01515 (Astex_0308) | ssb | 332645..333127 (-) | 483 | WP_013477840.1 | single-stranded DNA-binding protein | Machinery gene |
| ASTEX_RS01520 (Astex_0310) | - | 333228..333539 (-) | 312 | WP_013477842.1 | hypothetical protein | - |
| ASTEX_RS19145 (Astex_0311) | - | 333542..333874 (-) | 333 | WP_083805599.1 | DUF2312 domain-containing protein | - |
| ASTEX_RS01530 (Astex_0312) | - | 334146..334421 (-) | 276 | WP_013477844.1 | hypothetical protein | - |
| ASTEX_RS19735 (Astex_0316) | - | 335061..335753 (-) | 693 | WP_144004583.1 | S24 family peptidase | - |
| ASTEX_RS20215 (Astex_0317) | - | 336095..336676 (+) | 582 | WP_013477849.1 | hypothetical protein | - |
| ASTEX_RS01555 (Astex_0318) | - | 336673..337263 (+) | 591 | WP_013477850.1 | hypothetical protein | - |
| ASTEX_RS01560 (Astex_0319) | - | 337260..337709 (+) | 450 | WP_013477851.1 | phage regulatory CII family protein | - |
| ASTEX_RS01565 (Astex_0320) | - | 337706..338449 (+) | 744 | WP_013477852.1 | GcrA cell cycle regulator | - |
| ASTEX_RS01570 (Astex_0321) | - | 338439..338768 (+) | 330 | WP_013477853.1 | hypothetical protein | - |
| ASTEX_RS01575 (Astex_0322) | - | 338761..339468 (+) | 708 | WP_144004584.1 | hypothetical protein | - |
| ASTEX_RS01580 (Astex_0323) | - | 339465..340634 (+) | 1170 | WP_013477855.1 | hypothetical protein | - |
| ASTEX_RS01585 (Astex_0324) | - | 340631..342196 (+) | 1566 | WP_013477856.1 | phage/plasmid primase, P4 family | - |
| ASTEX_RS01590 (Astex_0325) | - | 342485..343021 (+) | 537 | WP_013477857.1 | ngn domain-containing protein | - |
| ASTEX_RS01595 (Astex_0326) | - | 343347..343646 (+) | 300 | WP_013477858.1 | HNH endonuclease | - |
| ASTEX_RS01600 (Astex_0327) | - | 343821..344318 (+) | 498 | WP_013477859.1 | hypothetical protein | - |
| ASTEX_RS01605 (Astex_0328) | - | 344323..346011 (+) | 1689 | WP_013477860.1 | terminase TerL endonuclease subunit | - |
| ASTEX_RS01610 (Astex_0329) | - | 346021..347259 (+) | 1239 | WP_013477861.1 | phage portal protein | - |
| ASTEX_RS01615 (Astex_0330) | - | 347231..348055 (+) | 825 | WP_013477862.1 | head maturation protease, ClpP-related | - |
| ASTEX_RS01620 (Astex_0331) | - | 348083..349384 (+) | 1302 | WP_013477863.1 | phage major capsid protein | - |
| ASTEX_RS01625 (Astex_0332) | - | 349467..349904 (+) | 438 | WP_013477864.1 | hypothetical protein | - |
| ASTEX_RS01630 (Astex_0333) | - | 349978..350283 (+) | 306 | WP_013477865.1 | head-tail connector protein | - |
| ASTEX_RS01635 (Astex_0334) | - | 350294..350479 (+) | 186 | WP_013477866.1 | hypothetical protein | - |
| ASTEX_RS01640 (Astex_0335) | - | 350479..350817 (+) | 339 | WP_013477867.1 | head-tail adaptor protein | - |
| ASTEX_RS01645 (Astex_0336) | - | 350814..351230 (+) | 417 | WP_013477868.1 | hypothetical protein | - |
| ASTEX_RS19155 (Astex_0337) | - | 351234..351656 (+) | 423 | WP_013477869.1 | DUF3168 domain-containing protein | - |
| ASTEX_RS01655 (Astex_0338) | - | 351729..352196 (+) | 468 | WP_013477870.1 | phage tail tube protein | - |
| ASTEX_RS01660 (Astex_0339) | - | 352196..352549 (+) | 354 | WP_013477871.1 | gene transfer agent family protein | - |
| ASTEX_RS20220 (Astex_0340) | - | 352561..352761 (+) | 201 | WP_041658415.1 | hypothetical protein | - |
| ASTEX_RS01670 (Astex_0341) | - | 352772..355723 (+) | 2952 | WP_013477873.1 | tape measure protein | - |
| ASTEX_RS01675 (Astex_0342) | - | 355720..356328 (+) | 609 | WP_013477874.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17713.78 Da Isoelectric Point: 5.8285
>NTDB_id=39199 ASTEX_RS01515 WP_013477840.1 332645..333127(-) (ssb) [Asticcacaulis excentricus CB 48]
MAGSVNKVIIIGHLGKDPEIRTTNSGDRIANMTVATSETWRDKLSGDRKEKTEWHRVVIFNDALAKIAEEYLRKGSQVYL
EGSLATRKWTDQQGVEKYTTEIVLQRFNGTLTLLGGRGEGKGPPAAQSQDEYGFDRPATRGVDATGRSVEPSPFDDEIPF
MAGSVNKVIIIGHLGKDPEIRTTNSGDRIANMTVATSETWRDKLSGDRKEKTEWHRVVIFNDALAKIAEEYLRKGSQVYL
EGSLATRKWTDQQGVEKYTTEIVLQRFNGTLTLLGGRGEGKGPPAAQSQDEYGFDRPATRGVDATGRSVEPSPFDDEIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=39199 ASTEX_RS01515 WP_013477840.1 332645..333127(-) (ssb) [Asticcacaulis excentricus CB 48]
ATGGCGGGATCCGTCAACAAGGTCATCATCATCGGCCACCTTGGGAAAGATCCCGAGATCCGCACCACGAACTCGGGCGA
TCGCATCGCCAACATGACCGTCGCCACGTCTGAGACATGGCGGGACAAGTTGTCTGGCGACCGCAAGGAAAAGACCGAAT
GGCATCGCGTGGTCATCTTCAATGACGCCCTTGCGAAGATTGCCGAGGAGTACCTGCGCAAGGGCTCACAGGTATATCTC
GAAGGCTCACTCGCAACGCGGAAGTGGACCGATCAGCAGGGCGTCGAGAAGTACACGACTGAGATCGTACTGCAGCGGTT
CAATGGCACTCTGACCCTGCTTGGGGGCCGTGGCGAGGGCAAAGGCCCACCCGCCGCTCAGAGCCAGGACGAATACGGCT
TCGATCGCCCGGCAACCCGTGGCGTGGACGCCACCGGACGCAGCGTTGAGCCCTCCCCCTTCGATGATGAAATTCCGTTT
TGA
ATGGCGGGATCCGTCAACAAGGTCATCATCATCGGCCACCTTGGGAAAGATCCCGAGATCCGCACCACGAACTCGGGCGA
TCGCATCGCCAACATGACCGTCGCCACGTCTGAGACATGGCGGGACAAGTTGTCTGGCGACCGCAAGGAAAAGACCGAAT
GGCATCGCGTGGTCATCTTCAATGACGCCCTTGCGAAGATTGCCGAGGAGTACCTGCGCAAGGGCTCACAGGTATATCTC
GAAGGCTCACTCGCAACGCGGAAGTGGACCGATCAGCAGGGCGTCGAGAAGTACACGACTGAGATCGTACTGCAGCGGTT
CAATGGCACTCTGACCCTGCTTGGGGGCCGTGGCGAGGGCAAAGGCCCACCCGCCGCTCAGAGCCAGGACGAATACGGCT
TCGATCGCCCGGCAACCCGTGGCGTGGACGCCACCGGACGCAGCGTTGAGCCCTCCCCCTTCGATGATGAAATTCCGTTT
TGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.778 |
100 |
0.538 |
| ssb | Glaesserella parasuis strain SC1401 |
45.055 |
100 |
0.513 |
| ssb | Neisseria meningitidis MC58 |
39.227 |
100 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
39.227 |
100 |
0.444 |