Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GBN93_RS16950 Genome accession   NZ_CP045103
Coordinates   3527218..3527802 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain AJ413     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3517523..3527802 3527218..3527802 within 0


Gene organization within MGE regions


Location: 3517523..3527802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS16910 (GBN93_16970) - 3517523..3518920 (-) 1398 WP_234964979.1 DNA methyltransferase -
  GBN93_RS16915 (GBN93_16975) - 3519282..3519890 (-) 609 WP_234964980.1 hypothetical protein -
  GBN93_RS16920 (GBN93_16980) - 3520500..3520976 (-) 477 WP_234964981.1 protein kinase -
  GBN93_RS16925 (GBN93_16985) - 3520969..3521682 (-) 714 WP_234964982.1 hypothetical protein -
  GBN93_RS16930 (GBN93_16990) - 3521798..3522963 (+) 1166 WP_234964377.1 IS3-like element ISAba22 family transposase -
  GBN93_RS16935 (GBN93_16995) - 3522993..3524249 (-) 1257 WP_234964983.1 hypothetical protein -
  GBN93_RS16940 (GBN93_17000) - 3524246..3525826 (-) 1581 WP_234964984.1 tyrosine-type recombinase/integrase -
  GBN93_RS16945 (GBN93_17005) - 3525828..3527000 (-) 1173 WP_234964985.1 tyrosine-type recombinase/integrase -
  GBN93_RS16950 (GBN93_17010) ssb 3527218..3527802 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=391971 GBN93_RS16950 WP_004691666.1 3527218..3527802(-) (ssb) [Acinetobacter johnsonii strain AJ413]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=391971 GBN93_RS16950 WP_004691666.1 3527218..3527802(-) (ssb) [Acinetobacter johnsonii strain AJ413]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCTGCGGGAAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423

Multiple sequence alignment