Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   F9230_RS16340 Genome accession   NZ_CP045099
Coordinates   3417757..3418890 (+) Length   377 a.a.
NCBI ID   WP_234950850.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3412757..3423890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS16320 (F9230_16370) - 3413259..3415325 (-) 2067 WP_234950847.1 TonB-dependent copper receptor -
  F9230_RS16325 (F9230_16375) - 3415398..3415835 (-) 438 WP_126038720.1 DUF2946 family protein -
  F9230_RS16330 (F9230_16380) def 3415926..3416459 (-) 534 WP_234950848.1 peptide deformylase -
  F9230_RS16335 (F9230_16385) tsaP 3416580..3417734 (+) 1155 WP_234950849.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  F9230_RS16340 (F9230_16390) dprA 3417757..3418890 (+) 1134 WP_234950850.1 DNA-processing protein DprA Machinery gene
  F9230_RS16345 (F9230_16395) - 3418936..3419505 (+) 570 WP_168159502.1 L-threonylcarbamoyladenylate synthase -
  F9230_RS16350 (F9230_16400) - 3419905..3420825 (-) 921 WP_168159503.1 DMT family transporter -
  F9230_RS16355 (F9230_16405) - 3421161..3421715 (+) 555 WP_234950851.1 hypothetical protein -
  F9230_RS16360 (F9230_16410) - 3421839..3422384 (+) 546 WP_004984048.1 glutathione peroxidase -
  F9230_RS16365 (F9230_16415) - 3422582..3422956 (+) 375 WP_234950852.1 RcnB family protein -
  F9230_RS16370 (F9230_16420) - 3423092..3423682 (+) 591 WP_234950853.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41672.32 Da        Isoelectric Point: 6.6420

>NTDB_id=391886 F9230_RS16340 WP_234950850.1 3417757..3418890(+) (dprA) [Acinetobacter johnsonii strain AJ14]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVAEIQTPAGQLKLQTLLQDV
QASCDFILLDTDSHYPSQLLPYADRPTILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLNLTYPSQHQALRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAQRAAEQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNIDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=391886 F9230_RS16340 WP_234950850.1 3417757..3418890(+) (dprA) [Acinetobacter johnsonii strain AJ14]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGCCATCTACAACGTGTCGCAGAAATCCAAACGCCTGCTGGCCAACTCAAATTACAAACTTTACTGCAGGACGTC
CAAGCCAGCTGTGATTTTATTTTACTTGATACTGACAGTCATTATCCCTCGCAGCTGCTGCCCTATGCTGACCGACCAAC
GATTTTATTTGGTCAGGGCAATCCACAAAGTTTACTCCAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCGC
ACGGCAAACAAGTGGCTTATGACTTTGCTTATTACCTCGCCGAAAAAGGCTTTTATATTTGCAGTGGTTTAGCTGAAGGC
ATTGATGCTGCGGCGCATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACAGGCTTAAATCTCACTTA
CCCTTCCCAACATCAAGCCCTGCGTACGCAAATATTAGAAAATAATGGCTGTATTATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGGAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTAGGAACCGCCCAAAGAGCTGCAGAACAAGGGAAAATCATTTTTGCGATTCCCGGTCATATTTA
CAGCGAACACCATCAAGGTTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGTGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACATCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.426

99.735

0.653

  dprA Acinetobacter baylyi ADP1

60.892

100

0.615


Multiple sequence alignment