Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   F9230_RS16335 Genome accession   NZ_CP045099
Coordinates   3416580..3417734 (+) Length   384 a.a.
NCBI ID   WP_234950849.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3411580..3422734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS16320 (F9230_16370) - 3413259..3415325 (-) 2067 WP_234950847.1 TonB-dependent copper receptor -
  F9230_RS16325 (F9230_16375) - 3415398..3415835 (-) 438 WP_126038720.1 DUF2946 family protein -
  F9230_RS16330 (F9230_16380) def 3415926..3416459 (-) 534 WP_234950848.1 peptide deformylase -
  F9230_RS16335 (F9230_16385) tsaP 3416580..3417734 (+) 1155 WP_234950849.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  F9230_RS16340 (F9230_16390) dprA 3417757..3418890 (+) 1134 WP_234950850.1 DNA-processing protein DprA Machinery gene
  F9230_RS16345 (F9230_16395) - 3418936..3419505 (+) 570 WP_168159502.1 L-threonylcarbamoyladenylate synthase -
  F9230_RS16350 (F9230_16400) - 3419905..3420825 (-) 921 WP_168159503.1 DMT family transporter -
  F9230_RS16355 (F9230_16405) - 3421161..3421715 (+) 555 WP_234950851.1 hypothetical protein -
  F9230_RS16360 (F9230_16410) - 3421839..3422384 (+) 546 WP_004984048.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42282.26 Da        Isoelectric Point: 7.8309

>NTDB_id=391885 F9230_RS16335 WP_234950849.1 3416580..3417734(+) (tsaP) [Acinetobacter johnsonii strain AJ14]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGIISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=391885 F9230_RS16335 WP_234950849.1 3416580..3417734(+) (tsaP) [Acinetobacter johnsonii strain AJ14]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCATCATTTCAACAGCTCAAGCGGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAATAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTTCCAGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTACCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.494

100

0.667

Multiple sequence alignment