Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   HNO12_RS12970 Genome accession   NZ_CP053376
Coordinates   2701697..2702392 (-) Length   231 a.a.
NCBI ID   WP_003152646.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2696697..2707392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS12940 (HNO12_12980) - 2696712..2697515 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  HNO12_RS12945 (HNO12_12985) minD 2697643..2698446 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  HNO12_RS12950 (HNO12_12990) minC 2698449..2699129 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  HNO12_RS12955 (HNO12_12995) mreD 2699183..2699701 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  HNO12_RS12960 (HNO12_13000) mreC 2699698..2700561 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  HNO12_RS12965 (HNO12_13005) mreB 2700592..2701605 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HNO12_RS12970 (HNO12_13010) ysxA/radC 2701697..2702392 (-) 696 WP_003152646.1 DNA repair protein RadC Machinery gene
  HNO12_RS12975 (HNO12_13015) - 2702424..2702993 (-) 570 WP_014305513.1 Maf family protein -
  HNO12_RS12980 (HNO12_13020) - 2703134..2704135 (-) 1002 WP_024085657.1 SPOR domain-containing protein -
  HNO12_RS12985 (HNO12_13025) comC 2704262..2705014 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  HNO12_RS12990 (HNO12_13030) - 2705154..2706446 (-) 1293 WP_024085658.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26094.33 Da        Isoelectric Point: 9.1909

>NTDB_id=391868 HNO12_RS12970 WP_003152646.1 2701697..2702392(-) (ysxA/radC) [Bacillus amyloliquefaciens strain WF02]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=391868 HNO12_RS12970 WP_003152646.1 2701697..2702392(-) (ysxA/radC) [Bacillus amyloliquefaciens strain WF02]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAGGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment