Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GIX98_RS16235 Genome accession   NZ_CP045064
Coordinates   3371984..3372520 (+) Length   178 a.a.
NCBI ID   WP_032636762.1    Uniprot ID   A0AA37AG70
Organism   Enterobacter roggenkampii strain WCHER090065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3366984..3377520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIX98_RS16210 (GBN88_07415) - 3367181..3367441 (-) 261 WP_126287353.1 hypothetical protein -
  GIX98_RS16215 (GBN88_07410) - 3367510..3368235 (+) 726 WP_032636754.1 PFL_4669 family integrating conjugative element protein -
  GIX98_RS16220 (GBN88_07405) - 3368237..3368791 (+) 555 WP_032636756.1 hypothetical protein -
  GIX98_RS16225 (GBN88_07400) - 3368807..3370816 (+) 2010 WP_110212570.1 DNA topoisomerase III -
  GIX98_RS16230 (GBN88_07395) - 3371452..3371922 (+) 471 WP_032636760.1 STY4534 family ICE replication protein -
  GIX98_RS16235 (GBN88_07390) ssb 3371984..3372520 (+) 537 WP_032636762.1 single-stranded DNA-binding protein Machinery gene
  GIX98_RS16240 (GBN88_07385) - 3372585..3372827 (+) 243 WP_016807972.1 DUF4160 domain-containing protein -
  GIX98_RS16245 (GBN88_07380) - 3372811..3373059 (+) 249 WP_004115558.1 DUF2442 domain-containing protein -
  GIX98_RS16250 (GBN88_07375) - 3373196..3373861 (+) 666 WP_126287351.1 PilL N-terminal domain-containing protein -
  GIX98_RS16255 (GBN88_07370) - 3373858..3374616 (+) 759 WP_034951183.1 hypothetical protein -
  GIX98_RS16260 (GBN88_07365) - 3374628..3375350 (+) 723 WP_126287355.1 TIGR03759 family integrating conjugative element protein -
  GIX98_RS16265 (GBN88_07360) - 3375329..3375964 (+) 636 WP_110212572.1 transglycosylase SLT domain-containing protein -
  GIX98_RS16270 (GBN88_07355) - 3375970..3376491 (+) 522 WP_110212573.1 integrating conjugative element protein -
  GIX98_RS16275 (GBN88_07350) - 3376491..3377085 (+) 595 Protein_3202 restriction endonuclease -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19202.38 Da        Isoelectric Point: 6.7211

>NTDB_id=391638 GIX98_RS16235 WP_032636762.1 3371984..3372520(+) (ssb) [Enterobacter roggenkampii strain WCHER090065]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSCEQKEVTEWHRVVMFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTIEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPSHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=391638 GIX98_RS16235 WP_032636762.1 3371984..3372520(+) (ssb) [Enterobacter roggenkampii strain WCHER090065]
ATGTCCTCACGCGGCGTTAACAAGGTTATCCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCTAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCTGCGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATGTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGTAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGATAAATACACCATAGAGGTGGTGGTCAATATTGG
TGGGACCATGCAGATGCTTGGCGGTCGGCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGTAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGAGTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCGCCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.277

99.438

0.629
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.5
  ssb Neisseria meningitidis MC58

44.633

99.438

0.444
  ssb Neisseria gonorrhoeae MS11

44.318

98.876

0.438

Multiple sequence alignment