Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   GBN67_RS14645 Genome accession   NZ_CP045051
Coordinates   3034154..3035287 (+) Length   377 a.a.
NCBI ID   WP_234963190.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3029154..3040287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS14625 (GBN67_14650) - 3029657..3031723 (-) 2067 WP_234963187.1 TonB-dependent copper receptor -
  GBN67_RS14630 (GBN67_14655) - 3031795..3032232 (-) 438 WP_234963188.1 DUF2946 family protein -
  GBN67_RS14635 (GBN67_14660) def 3032323..3032856 (-) 534 WP_004684452.1 peptide deformylase -
  GBN67_RS14640 (GBN67_14665) tsaP 3032977..3034131 (+) 1155 WP_234963189.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GBN67_RS14645 (GBN67_14670) dprA 3034154..3035287 (+) 1134 WP_234963190.1 DNA-processing protein DprA Machinery gene
  GBN67_RS14650 (GBN67_14675) - 3035333..3035902 (+) 570 WP_078389799.1 L-threonylcarbamoyladenylate synthase -
  GBN67_RS14655 (GBN67_14680) - 3036302..3037222 (-) 921 WP_234963191.1 DMT family transporter -
  GBN67_RS14660 (GBN67_14685) - 3037558..3038112 (+) 555 WP_234963192.1 hypothetical protein -
  GBN67_RS14665 (GBN67_14690) - 3038236..3038781 (+) 546 WP_234963193.1 glutathione peroxidase -
  GBN67_RS14670 (GBN67_14695) - 3038981..3039355 (+) 375 WP_234963194.1 RcnB family protein -
  GBN67_RS14675 (GBN67_14700) - 3039491..3040081 (+) 591 WP_017396937.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41711.35 Da        Isoelectric Point: 6.6420

>NTDB_id=391551 GBN67_RS14645 WP_234963190.1 3034154..3035287(+) (dprA) [Acinetobacter johnsonii strain AJ312]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVVEIQTPAGQIKLQTLLQDV
QANCDFILLDTDSHYPSQLLPYADRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLNLTYPSQHQALRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAQRAAEQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=391551 GBN67_RS14645 WP_234963190.1 3034154..3035287(+) (dprA) [Acinetobacter johnsonii strain AJ312]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTGGTTCAGCATTCTTTATCAAGCTTTCA
AAAACTACAACAACATTTTGGCACAAGCACAAAAGCCGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGTCATCTACAACGTGTCGTAGAAATTCAAACACCTGCTGGACAAATCAAATTACAAACTTTACTGCAGGACGTC
CAAGCCAATTGTGATTTTATTTTACTTGATACTGACAGTCATTATCCCTCGCAGCTGCTGCCCTATGCTGACCGACCACC
GATTTTATTTGGTCAGGGCAATCCACAAAGTTTACTCCAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCGC
ACGGCAAACAAGTGGCTTATGACTTTGCTTATTACCTCGCCGAAAAAGGCTTTTATATTTGCAGTGGTTTAGCTGAAGGC
ATTGATGCTGCGGCGCATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACAGGCTTAAATCTCACTTA
TCCTTCCCAACATCAAGCCCTGCGTACACAAATATTAGAAAATAATGGCTGTATTATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGGAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTAGGAACCGCCCAAAGAGCTGCAGAACAAGGGAAAATAATTTTTGCGATTCCTGGTCATATTTA
CAGCGAACACCATCAAGGTTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGTGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.426

99.735

0.653

  dprA Acinetobacter baylyi ADP1

61.155

100

0.618


Multiple sequence alignment