Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GBN67_RS14640 Genome accession   NZ_CP045051
Coordinates   3032977..3034131 (+) Length   384 a.a.
NCBI ID   WP_234963189.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3027977..3039131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS14625 (GBN67_14650) - 3029657..3031723 (-) 2067 WP_234963187.1 TonB-dependent copper receptor -
  GBN67_RS14630 (GBN67_14655) - 3031795..3032232 (-) 438 WP_234963188.1 DUF2946 family protein -
  GBN67_RS14635 (GBN67_14660) def 3032323..3032856 (-) 534 WP_004684452.1 peptide deformylase -
  GBN67_RS14640 (GBN67_14665) tsaP 3032977..3034131 (+) 1155 WP_234963189.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GBN67_RS14645 (GBN67_14670) dprA 3034154..3035287 (+) 1134 WP_234963190.1 DNA-processing protein DprA Machinery gene
  GBN67_RS14650 (GBN67_14675) - 3035333..3035902 (+) 570 WP_078389799.1 L-threonylcarbamoyladenylate synthase -
  GBN67_RS14655 (GBN67_14680) - 3036302..3037222 (-) 921 WP_234963191.1 DMT family transporter -
  GBN67_RS14660 (GBN67_14685) - 3037558..3038112 (+) 555 WP_234963192.1 hypothetical protein -
  GBN67_RS14665 (GBN67_14690) - 3038236..3038781 (+) 546 WP_234963193.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42268.23 Da        Isoelectric Point: 7.8309

>NTDB_id=391550 GBN67_RS14640 WP_234963189.1 3032977..3034131(+) (tsaP) [Acinetobacter johnsonii strain AJ312]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIIGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=391550 GBN67_RS14640 WP_234963189.1 3032977..3034131(+) (tsaP) [Acinetobacter johnsonii strain AJ312]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCGGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCCTTGGAAGGTACACCGTATATCATTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGTAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGATATGTCCACCTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAAGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGGAT
CGGCAACATCATGGTCTTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.714

100

0.659

Multiple sequence alignment