Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LG542_RS06765 Genome accession   NZ_CP045007
Coordinates   1381774..1383126 (-) Length   450 a.a.
NCBI ID   WP_057908843.1    Uniprot ID   A0AA89HZC7
Organism   Latilactobacillus graminis strain LG542     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1376774..1388126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS06750 (LG542_06755) secA 1377857..1380220 (-) 2364 WP_057908846.1 preprotein translocase subunit SecA -
  LG542_RS06755 (LG542_06760) hpf 1380447..1380992 (-) 546 WP_057908845.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LG542_RS06760 (LG542_06765) comFC 1381118..1381648 (-) 531 WP_151886756.1 ComF family protein Machinery gene
  LG542_RS06765 (LG542_06770) comFA 1381774..1383126 (-) 1353 WP_057908843.1 DEAD/DEAH box helicase Machinery gene
  LG542_RS06770 (LG542_06775) - 1383183..1383845 (+) 663 WP_057908842.1 YigZ family protein -
  LG542_RS06775 (LG542_06780) - 1383869..1384957 (-) 1089 WP_057908880.1 glycosyltransferase family 4 protein -
  LG542_RS06780 (LG542_06785) hemH 1385077..1386018 (-) 942 WP_057908841.1 ferrochelatase -
  LG542_RS06785 (LG542_06790) rny 1386142..1387704 (-) 1563 WP_057908840.1 ribonuclease Y -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50500.86 Da        Isoelectric Point: 9.6706

>NTDB_id=391209 LG542_RS06765 WP_057908843.1 1381774..1383126(-) (comFA) [Latilactobacillus graminis strain LG542]
MIEKQLACGRQWSATQFSSVMNNYSLPQIKQRPAFQKIDQQLVCQRCHQVVSEQTCLPDGRYYCAACLMFGRLVEGDQLV
YIPEENQFATVEQPLTWSGTLTAFQAQAAEKIVTVVTNKQQHVLTAVTGAGKTEMLFSGIATALARGQRVCVAAPRVAVC
LELYPRLQTAFAKTPSMLMYGTQTAPYMYTPLVVCTTHQLFKFYHAFDTVIVDEVDAFPYVNNPLLATAVKQACKPHCAL
IYLTATPTAKLRHAINIGQLTESELPIRFHGHLLPEPHCRPIFRWRQTIKRHKLPRVLQALIQDCLKTQRLLLFVPQVHD
LEQVRRSIVKTLPKVAVATVHASDPDQLAKIAAFRSGTGDILITTTVLERGVTLKNVAVFVLGAEHIVFNEAVLVQIAGR
AGRDKAYAANLVYFFYTDYTLAIKRACQQIKYQNQKGRRLQSTVRSVQRP

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=391209 LG542_RS06765 WP_057908843.1 1381774..1383126(-) (comFA) [Latilactobacillus graminis strain LG542]
ATGATCGAAAAACAACTTGCTTGTGGCCGTCAGTGGAGTGCCACCCAGTTTAGTTCAGTTATGAATAATTATAGTTTACC
ACAGATTAAACAGCGACCAGCTTTTCAAAAGATTGATCAGCAATTAGTTTGTCAACGGTGTCACCAAGTAGTTAGTGAAC
AAACTTGTTTACCTGATGGTCGGTATTATTGCGCGGCGTGTTTGATGTTTGGTCGATTGGTTGAAGGCGATCAGCTTGTC
TATATACCAGAAGAGAACCAATTTGCCACAGTTGAGCAACCATTAACATGGTCGGGAACGTTAACGGCGTTTCAAGCACA
AGCAGCAGAAAAGATTGTCACCGTGGTCACTAATAAGCAACAGCATGTTCTAACGGCAGTTACCGGCGCTGGAAAAACGG
AAATGTTATTCAGCGGGATTGCTACTGCTTTGGCCCGCGGTCAACGCGTATGTGTTGCTGCACCACGGGTAGCTGTTTGC
TTGGAACTTTATCCACGATTACAAACTGCATTTGCTAAAACGCCATCGATGCTAATGTATGGCACACAGACGGCACCGTA
TATGTACACGCCATTAGTTGTTTGTACCACGCATCAGTTATTTAAATTTTATCATGCTTTCGATACGGTAATTGTTGATG
AGGTTGACGCATTCCCTTATGTGAACAATCCGCTATTAGCAACAGCCGTTAAGCAAGCGTGTAAGCCGCATTGTGCACTA
ATCTATCTAACCGCTACCCCGACTGCTAAGTTACGCCATGCAATCAATATAGGGCAGTTAACTGAAAGTGAATTACCAAT
TCGATTTCACGGTCATTTGTTACCAGAACCGCATTGTCGGCCAATATTTCGGTGGCGGCAAACGATTAAGCGCCATAAAT
TGCCGCGTGTATTACAAGCTTTAATTCAAGATTGTTTGAAAACACAACGTTTGTTGTTGTTTGTGCCGCAAGTACACGAC
CTAGAACAAGTACGTAGAAGCATTGTCAAGACGTTGCCGAAGGTTGCAGTTGCCACTGTGCACGCCAGTGATCCGGATCA
GTTGGCTAAAATCGCAGCGTTTAGATCCGGTACAGGGGATATTTTAATAACAACCACTGTTTTAGAACGAGGTGTCACGC
TTAAAAATGTAGCCGTTTTTGTGTTAGGTGCAGAACACATTGTGTTTAATGAGGCGGTTCTCGTCCAAATTGCGGGACGT
GCAGGGCGAGACAAGGCCTATGCGGCTAATCTGGTCTATTTTTTCTATACAGATTATACGCTTGCCATTAAACGGGCGTG
CCAACAAATTAAATATCAAAACCAAAAAGGACGGCGATTACAATCAACTGTCAGATCTGTGCAGCGACCATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(296-403)

Type III restriction enzyme, res subunit (ResIII)

(101-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.169

98.889

0.644
  comFA/cflA Streptococcus mitis SK321

41.565

90.889

0.378
  comFA/cflA Streptococcus pneumoniae TIGR4

40.786

90.444

0.369
  comFA/cflA Streptococcus pneumoniae D39

40.541

90.444

0.367
  comFA/cflA Streptococcus pneumoniae Rx1

40.541

90.444

0.367
  comFA/cflA Streptococcus pneumoniae R6

40.541

90.444

0.367
  comFA Bacillus subtilis subsp. subtilis str. 168

40.394

90.222

0.364
  comFA/cflA Streptococcus mitis NCTC 12261

40.148

90.222

0.362

Multiple sequence alignment