Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LG542_RS06760 | Genome accession | NZ_CP045007 |
| Coordinates | 1381118..1381648 (-) | Length | 176 a.a. |
| NCBI ID | WP_151886756.1 | Uniprot ID | - |
| Organism | Latilactobacillus graminis strain LG542 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1376118..1386648
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG542_RS06750 (LG542_06755) | secA | 1377857..1380220 (-) | 2364 | WP_057908846.1 | preprotein translocase subunit SecA | - |
| LG542_RS06755 (LG542_06760) | hpf | 1380447..1380992 (-) | 546 | WP_057908845.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LG542_RS06760 (LG542_06765) | comFC | 1381118..1381648 (-) | 531 | WP_151886756.1 | ComF family protein | Machinery gene |
| LG542_RS06765 (LG542_06770) | comFA | 1381774..1383126 (-) | 1353 | WP_057908843.1 | DEAD/DEAH box helicase | Machinery gene |
| LG542_RS06770 (LG542_06775) | - | 1383183..1383845 (+) | 663 | WP_057908842.1 | YigZ family protein | - |
| LG542_RS06775 (LG542_06780) | - | 1383869..1384957 (-) | 1089 | WP_057908880.1 | glycosyltransferase family 4 protein | - |
| LG542_RS06780 (LG542_06785) | hemH | 1385077..1386018 (-) | 942 | WP_057908841.1 | ferrochelatase | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 20869.21 Da Isoelectric Point: 9.8853
>NTDB_id=391208 LG542_RS06760 WP_151886756.1 1381118..1381648(-) (comFC) [Latilactobacillus graminis strain LG542]
MPKIAECSDCIRWQQQYPQQGFINRALFVYNEPMQQYFQQYKGHGDYRLRQVFRGVIRKNCPVKRQTMYVPIPTDPAHLQ
SRGFNPVIGLYQDCFPLTPLLTKLPTEKNQAQKNRVERLATPQFFEYNLQSRLPMNIRQIILLDDIYTTGRTLWHAQQCL
RQQFPMVSIHAITLVH
MPKIAECSDCIRWQQQYPQQGFINRALFVYNEPMQQYFQQYKGHGDYRLRQVFRGVIRKNCPVKRQTMYVPIPTDPAHLQ
SRGFNPVIGLYQDCFPLTPLLTKLPTEKNQAQKNRVERLATPQFFEYNLQSRLPMNIRQIILLDDIYTTGRTLWHAQQCL
RQQFPMVSIHAITLVH
Nucleotide
Download Length: 531 bp
>NTDB_id=391208 LG542_RS06760 WP_151886756.1 1381118..1381648(-) (comFC) [Latilactobacillus graminis strain LG542]
ATGCCCAAAATAGCCGAGTGTTCAGACTGCATACGGTGGCAACAACAGTATCCGCAACAAGGCTTTATTAATCGGGCATT
ATTTGTTTATAATGAGCCGATGCAACAGTATTTCCAGCAATATAAAGGCCATGGTGATTATCGCTTACGACAGGTTTTTC
GAGGGGTGATTCGTAAAAACTGTCCTGTGAAACGGCAAACGATGTATGTACCGATTCCAACTGATCCGGCACATTTACAA
AGCCGAGGGTTTAATCCAGTGATCGGGTTGTATCAAGATTGTTTTCCATTAACACCATTACTAACAAAATTACCAACTGA
AAAAAACCAAGCACAGAAAAATCGAGTTGAACGGCTGGCAACCCCGCAATTTTTTGAATACAATTTGCAAAGCCGCTTGC
CGATGAACATTCGGCAAATAATTCTATTAGATGATATCTATACAACCGGACGAACATTGTGGCATGCGCAACAATGCTTA
CGTCAGCAATTCCCAATGGTATCGATTCACGCCATAACGTTAGTTCATTAA
ATGCCCAAAATAGCCGAGTGTTCAGACTGCATACGGTGGCAACAACAGTATCCGCAACAAGGCTTTATTAATCGGGCATT
ATTTGTTTATAATGAGCCGATGCAACAGTATTTCCAGCAATATAAAGGCCATGGTGATTATCGCTTACGACAGGTTTTTC
GAGGGGTGATTCGTAAAAACTGTCCTGTGAAACGGCAAACGATGTATGTACCGATTCCAACTGATCCGGCACATTTACAA
AGCCGAGGGTTTAATCCAGTGATCGGGTTGTATCAAGATTGTTTTCCATTAACACCATTACTAACAAAATTACCAACTGA
AAAAAACCAAGCACAGAAAAATCGAGTTGAACGGCTGGCAACCCCGCAATTTTTTGAATACAATTTGCAAAGCCGCTTGC
CGATGAACATTCGGCAAATAATTCTATTAGATGATATCTATACAACCGGACGAACATTGTGGCATGCGCAACAATGCTTA
CGTCAGCAATTCCCAATGGTATCGATTCACGCCATAACGTTAGTTCATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
63.38 |
80.682 |
0.511 |