Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG542_RS00040 Genome accession   NZ_CP045007
Coordinates   9453..9965 (+) Length   170 a.a.
NCBI ID   WP_057907674.1    Uniprot ID   A0AA89I2F9
Organism   Latilactobacillus graminis strain LG542     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4453..14965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS00030 (LG542_00030) gyrA 6317..8884 (+) 2568 WP_057907676.1 DNA gyrase subunit A -
  LG542_RS00035 (LG542_00035) rpsF 9117..9413 (+) 297 WP_057907675.1 30S ribosomal protein S6 -
  LG542_RS00040 (LG542_00040) ssb 9453..9965 (+) 513 WP_057907674.1 single-stranded DNA-binding protein Machinery gene
  LG542_RS00045 (LG542_00045) rpsR 9996..10235 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  LG542_RS00050 (LG542_00050) - 10450..12480 (+) 2031 WP_057907673.1 DHH family phosphoesterase -
  LG542_RS00055 (LG542_00055) rplI 12502..12954 (+) 453 WP_057907672.1 50S ribosomal protein L9 -
  LG542_RS00060 (LG542_00060) dnaB 13101..14504 (+) 1404 WP_192937880.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18618.20 Da        Isoelectric Point: 4.6856

>NTDB_id=391186 LG542_RS00040 WP_057907674.1 9453..9965(+) (ssb) [Latilactobacillus graminis strain LG542]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQSDGANQNFNSNQSNGSQQSGLTSPQQTGNTPAANSTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=391186 LG542_RS00040 WP_057907674.1 9453..9965(+) (ssb) [Latilactobacillus graminis strain LG542]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGGGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATTAACTGTGTCATCT
GGCGCAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTACGAAAACCAACAAGGTCAACGAGTTTACGTGACTGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGACAAAGTGATGGTGCAAACCAAAACTTTAACAGCAACCAAAGCAATGGTAGTCAACAGTCTGGAC
TTACCAGCCCTCAACAAACGGGTAATACACCAGCTGCAAATAGCACTCAAGCGGATCCATTTGCTAATAATGGGCAAGCA
ATTGATATTTCAGACGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

96.471

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.216

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment