Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NMBNZ0533_RS06830 Genome accession   NC_017518
Coordinates   1246444..1247475 (+) Length   343 a.a.
NCBI ID   WP_002235823.1    Uniprot ID   Q9JUB0
Organism   Neisseria meningitidis NZ-05/33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241444..1252475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS06810 (NMBNZ0533_1205) - 1242341..1242715 (-) 375 WP_002223750.1 arsenate reductase -
  NMBNZ0533_RS06815 (NMBNZ0533_1206) - 1242865..1244493 (+) 1629 WP_014582436.1 ABC-F family ATPase -
  NMBNZ0533_RS06820 (NMBNZ0533_1207) - 1244578..1245831 (+) 1254 WP_014581064.1 multifunctional CCA addition/repair protein -
  NMBNZ0533_RS06825 (NMBNZ0533_1208) - 1246054..1246362 (+) 309 WP_002232489.1 hypothetical protein -
  NMBNZ0533_RS06830 (NMBNZ0533_1209) ruvB 1246444..1247475 (+) 1032 WP_002235823.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NMBNZ0533_RS06835 (NMBNZ0533_1210) rpe 1247498..1248226 (-) 729 WP_002213492.1 ribulose-phosphate 3-epimerase -
  NMBNZ0533_RS06840 (NMBNZ0533_1211) - 1248537..1248971 (+) 435 WP_002213489.1 Spy/CpxP family protein refolding chaperone -
  NMBNZ0533_RS06845 (NMBNZ0533_1212) - 1248984..1249847 (-) 864 WP_002243531.1 ATP-binding protein -
  NMBNZ0533_RS15425 (NMBNZ0533_1213) - 1249855..1250472 (-) 618 WP_002217135.1 riboflavin synthase -
  NMBNZ0533_RS15430 (NMBNZ0533_1214) - 1250635..1251249 (-) 615 WP_015815602.1 molybdenum cofactor guanylyltransferase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37666.18 Da        Isoelectric Point: 5.2966

>NTDB_id=39118 NMBNZ0533_RS06830 WP_002235823.1 1246444..1247475(+) (ruvB) [Neisseria meningitidis NZ-05/33]
MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL
AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIVSRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVR
DFADVKNNGTIDGGIADAALSMLDVDVQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFL
QRTPRGRMATERAYLHFGLPVEK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=39118 NMBNZ0533_RS06830 WP_002235823.1 1246444..1247475(+) (ruvB) [Neisseria meningitidis NZ-05/33]
ATGCTGCAAACCGACAACCTGACTGCCGCTCAACCGCAACGCATTGTTGCCGCCCAAACCGCCTCCGCACAGGAAGAACT
GCTCGAACGCGCCCTCCGCCCCAAAACGCTGGACGACTATATCGGGCAGCATAAAGCCAAAGAACAGCTCGCCATTTTCA
TCCAAGCCGCCAAAAAACGCGGCGAAGCACTCGACCACGTTTTGCTCTTCGGCCCGCCCGGACTGGGTAAAACCACACTG
GCGCACATCATCGCCAAAGAATTGGGCGTAAATTTGCGCCAAACCAGCGGCCCCGTCCTCGAACGCGCCGGCGATCTCGC
CGCCCTTTTGACCAACCTTGATCCGCACGACGTATTGTTTATCGACGAAATCCACCGCCTCAGCCCTGTTGTCGAAGAAA
TCCTCTACCCCGCGCTTGAAGACTACCGGCTCGACATTATGATAGGCGAAGGGCCCGCCGCCCGTTCCGTTAAAATCGAC
CTGCCGCCCTTCACGCTTGTCGGCGCGACCACCCGCGCCGGTATGCTGACCAATCCGTTGCGCGACCGCTTCGGCATCGT
CTCCCGCCTCGAGTTTTACGAAAACCGCGACCTTGCCACCATCGTCAGCCGTTCGGCACAACTCCTGCAACTCGATATGT
CCGAAGAAGGCGCGGAAGAAATCGCCAAACGCAGCCGCGGTACGCCGCGCATCGCCAACCGCCTGTTGCGCCGCGTGCGC
GATTTCGCCGACGTGAAAAACAACGGCACAATCGACGGCGGCATCGCCGATGCCGCTTTAAGTATGCTGGACGTGGACGT
GCAGGGGCTGGACGTGATGGACAGGAAATTCCTCGAAGCCGTTTTGCACAAATTCGGCGGCGGCCCGGTCGGTTTGGACA
ATGTTGCCGCCGCCATCGGCGAATCAACAGACACCATCGAAGACGTTATCGAACCCTACCTTATCCAACAAGGCTTCCTG
CAACGCACCCCGCGCGGCAGGATGGCGACCGAACGCGCCTACCTGCATTTCGGGCTGCCCGTCGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-337)

RuvB AAA lid domain (AAA_lid_4)

(193-266)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(32-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JUB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.468

95.335

0.586
  ruvB Streptococcus pneumoniae TIGR4

62.42

91.545

0.571
  ruvB Streptococcus pneumoniae R6

62.42

91.545

0.571
  ruvB Streptococcus pneumoniae D39

62.42

91.545

0.571
  ruvB Helicobacter pylori 26695

57.508

91.254

0.525
  ruvB Synechocystis sp. PCC 6803

54.878

95.627

0.525

Multiple sequence alignment