Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FT787_RS00745 Genome accession   NZ_CP044970
Coordinates   155517..156035 (-) Length   172 a.a.
NCBI ID   WP_029924876.1    Uniprot ID   A0A011VB38
Organism   Brucella anthropi strain T16R-87     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150517..161035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FT787_RS00710 (FT787_00710) - 150773..151666 (-) 894 WP_012092082.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -
  FT787_RS00715 (FT787_00715) - 151663..152772 (-) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  FT787_RS00720 (FT787_00720) phnH 152775..153404 (-) 630 WP_151576367.1 phosphonate C-P lyase system protein PhnH -
  FT787_RS00725 (FT787_00725) phnG 153404..153820 (-) 417 WP_043061739.1 phosphonate C-P lyase system protein PhnG -
  FT787_RS00735 (FT787_00735) phnF 154146..154919 (+) 774 WP_166942007.1 phosphonate metabolism transcriptional regulator PhnF -
  FT787_RS00740 (FT787_00740) arsC 154987..155400 (+) 414 WP_151576369.1 arsenate reductase (glutaredoxin) -
  FT787_RS00745 (FT787_00745) ssb 155517..156035 (-) 519 WP_029924876.1 single-stranded DNA-binding protein Machinery gene
  FT787_RS00755 (FT787_00755) uvrA 157028..159952 (+) 2925 WP_151576371.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.33 Da        Isoelectric Point: 5.3476

>NTDB_id=391039 FT787_RS00745 WP_029924876.1 155517..156035(-) (ssb) [Brucella anthropi strain T16R-87]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGSSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=391039 FT787_RS00745 WP_029924876.1 155517..156035(-) (ssb) [Brucella anthropi strain T16R-87]
ATGGCTGGTAGTGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAATTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGACCGTCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAGAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGCGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAATGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAGCTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGATTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCTGGCCCATCCAATCAGGGTGGCAGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A011VB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.714

100

0.506
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395

Multiple sequence alignment