Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F7984_RS18780 Genome accession   NZ_CP044545
Coordinates   3920523..3921029 (-) Length   168 a.a.
NCBI ID   WP_066109692.1    Uniprot ID   A0A1B9ABG6
Organism   Pradoshia sp. D12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3915523..3926029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS18760 (F7984_18760) dnaB 3915862..3917226 (-) 1365 WP_066109682.1 replicative DNA helicase -
  F7984_RS18765 (F7984_18765) rplI 3917454..3917900 (-) 447 WP_066109684.1 50S ribosomal protein L9 -
  F7984_RS18770 (F7984_18770) - 3917897..3919870 (-) 1974 WP_140461918.1 DHH family phosphoesterase -
  F7984_RS18775 (F7984_18775) rpsR 3920228..3920470 (-) 243 WP_066109691.1 30S ribosomal protein S18 -
  F7984_RS18780 (F7984_18780) ssbA 3920523..3921029 (-) 507 WP_066109692.1 single-stranded DNA-binding protein Machinery gene
  F7984_RS18785 (F7984_18785) rpsF 3921091..3921384 (-) 294 WP_302621348.1 30S ribosomal protein S6 -
  F7984_RS18790 (F7984_18790) ychF 3921525..3922625 (-) 1101 WP_066109696.1 redox-regulated ATPase YchF -
  F7984_RS18795 (F7984_18795) - 3922798..3922995 (-) 198 WP_066109702.1 DUF951 domain-containing protein -
  F7984_RS18800 (F7984_18800) yyaC 3923542..3924180 (+) 639 WP_066109705.1 spore protease YyaC -
  F7984_RS18805 (F7984_18805) - 3924211..3925053 (-) 843 WP_066109707.1 ParB/RepB/Spo0J family partition protein -
  F7984_RS18810 (F7984_18810) - 3925046..3925807 (-) 762 WP_066109709.1 ParA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18636.34 Da        Isoelectric Point: 4.9833

>NTDB_id=390940 F7984_RS18780 WP_066109692.1 3920523..3921029(-) (ssbA) [Pradoshia sp. D12]
MINRVILVGRLTKDPDLRYTPNGVPVSTFTLAVNRPFSNQQGERETDFINCVVWRRQAENAANYLKKGNLAGVDGRIQTR
NYEGQDGKRVYVTEVLAESVQFLEPKGSSAGEKSGGSQYGGHDTNPFGQGNSNQNQNQRKDSNYTKIDDDPFSSNGQTID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=390940 F7984_RS18780 WP_066109692.1 3920523..3921029(-) (ssbA) [Pradoshia sp. D12]
TTGATAAACCGTGTCATTTTGGTAGGTCGTTTAACGAAGGATCCTGATCTCCGCTATACTCCGAATGGTGTTCCTGTTTC
AACCTTCACATTAGCAGTGAATCGCCCATTTTCTAACCAACAAGGTGAACGGGAAACAGATTTTATTAACTGTGTTGTTT
GGCGACGCCAGGCAGAAAATGCAGCTAATTATCTGAAAAAGGGTAATCTTGCTGGAGTTGATGGACGTATTCAAACTCGT
AATTATGAAGGTCAGGATGGAAAACGTGTCTATGTAACAGAAGTGTTGGCAGAGAGCGTACAATTCCTAGAGCCTAAAGG
TTCATCTGCCGGTGAAAAAAGCGGCGGAAGCCAATATGGTGGTCATGATACCAATCCGTTTGGCCAGGGAAATAGCAACC
AAAACCAGAATCAACGGAAGGACAGTAATTATACGAAGATTGATGATGATCCATTCAGTAGTAATGGACAAACTATCGAT
ATTTCGGATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9ABG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.842

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

52.778

100

0.565
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

63.095

0.393
  ssb Glaesserella parasuis strain SC1401

34.078

100

0.363

Multiple sequence alignment