Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   F7R60_RS17700 Genome accession   NZ_CP044519
Coordinates   3693405..3694223 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 29FS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3688405..3699223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R60_RS17685 (F7R60_17880) pilE 3688622..3689047 (-) 426 WP_000788335.1 type IV pilin protein Machinery gene
  F7R60_RS17690 (F7R60_17885) pilY2 3689044..3689526 (-) 483 WP_001046414.1 type IV pilin protein Machinery gene
  F7R60_RS17695 (F7R60_17890) pilY1 3689539..3693393 (-) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  F7R60_RS17700 (F7R60_17895) pilX 3693405..3694223 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  F7R60_RS17705 (F7R60_17900) pilW 3694220..3695221 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  F7R60_RS17710 (F7R60_17905) pilV 3695222..3695782 (-) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  F7R60_RS17715 (F7R60_17910) fimU 3695776..3696249 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F7R60_RS17720 (F7R60_17915) ispH 3696419..3697369 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  F7R60_RS17725 (F7R60_17920) gmk 3697492..3698121 (+) 630 WP_000015937.1 guanylate kinase -
  F7R60_RS17730 (F7R60_17925) rpoZ 3698194..3698472 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  F7R60_RS17735 (F7R60_17930) - 3698511..3698641 (+) 131 Protein_3474 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=390802 F7R60_RS17700 WP_000149374.1 3693405..3694223(-) (pilX) [Acinetobacter baumannii strain 29FS20]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=390802 F7R60_RS17700 WP_000149374.1 3693405..3694223(-) (pilX) [Acinetobacter baumannii strain 29FS20]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment