Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   F7R60_RS17705 Genome accession   NZ_CP044519
Coordinates   3694220..3695221 (-) Length   333 a.a.
NCBI ID   WP_000079197.1    Uniprot ID   A0A009TMX3
Organism   Acinetobacter baumannii strain 29FS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689220..3700221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R60_RS17695 (F7R60_17890) pilY1 3689539..3693393 (-) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  F7R60_RS17700 (F7R60_17895) pilX 3693405..3694223 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  F7R60_RS17705 (F7R60_17900) pilW 3694220..3695221 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  F7R60_RS17710 (F7R60_17905) pilV 3695222..3695782 (-) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  F7R60_RS17715 (F7R60_17910) fimU 3695776..3696249 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F7R60_RS17720 (F7R60_17915) ispH 3696419..3697369 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  F7R60_RS17725 (F7R60_17920) gmk 3697492..3698121 (+) 630 WP_000015937.1 guanylate kinase -
  F7R60_RS17730 (F7R60_17925) rpoZ 3698194..3698472 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  F7R60_RS17735 (F7R60_17930) - 3698511..3698641 (+) 131 Protein_3474 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=390803 F7R60_RS17705 WP_000079197.1 3694220..3695221(-) (pilW) [Acinetobacter baumannii strain 29FS20]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=390803 F7R60_RS17705 WP_000079197.1 3694220..3695221(-) (pilW) [Acinetobacter baumannii strain 29FS20]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment