Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F7R60_RS17685 Genome accession   NZ_CP044519
Coordinates   3688622..3689047 (-) Length   141 a.a.
NCBI ID   WP_000788335.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29FS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683622..3694047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R60_RS17655 (F7R60_17850) - 3684153..3685184 (+) 1032 WP_002007674.1 lipase secretion chaperone -
  F7R60_RS17660 (F7R60_17855) - 3685299..3686240 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  F7R60_RS17665 (F7R60_17860) rplS 3686293..3686661 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  F7R60_RS17670 (F7R60_17865) trmD 3686870..3687610 (-) 741 WP_000464600.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F7R60_RS17675 (F7R60_17870) rimM 3687656..3688204 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  F7R60_RS17680 (F7R60_17875) rpsP 3688224..3688475 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  F7R60_RS17685 (F7R60_17880) pilE 3688622..3689047 (-) 426 WP_000788335.1 type IV pilin protein Machinery gene
  F7R60_RS17690 (F7R60_17885) pilY2 3689044..3689526 (-) 483 WP_001046414.1 type IV pilin protein Machinery gene
  F7R60_RS17695 (F7R60_17890) pilY1 3689539..3693393 (-) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15204.41 Da        Isoelectric Point: 7.8144

>NTDB_id=390799 F7R60_RS17685 WP_000788335.1 3688622..3689047(-) (pilE) [Acinetobacter baumannii strain 29FS20]
MKNGFSLIEIMVVVAIVAILAAIAIPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=390799 F7R60_RS17685 WP_000788335.1 3688622..3689047(-) (pilE) [Acinetobacter baumannii strain 29FS20]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCATCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACCTTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

96.454

100

0.965
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504

Multiple sequence alignment