Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NLA_RS07955 Genome accession   NC_014752
Coordinates   1651615..1652421 (+) Length   268 a.a.
NCBI ID   WP_013449289.1    Uniprot ID   A0A378VKF1
Organism   Neisseria lactamica 020-06     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1646615..1657421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07930 (NLA_15260) holA 1646628..1647626 (-) 999 WP_013449284.1 DNA polymerase III subunit delta -
  NLA_RS07935 (NLA_15270) lptE 1647628..1648107 (-) 480 WP_013449285.1 LPS assembly lipoprotein LptE -
  NLA_RS07940 (NLA_15280) pgeF 1648159..1648938 (-) 780 WP_013449286.1 peptidoglycan editing factor PgeF -
  NLA_RS11795 - 1649091..1649315 (+) 225 WP_231844348.1 hypothetical protein -
  NLA_RS07945 (NLA_15290) - 1649392..1650339 (+) 948 WP_013449287.1 bile acid:sodium symporter family protein -
  NLA_RS07950 (NLA_15310) rluD 1650492..1651616 (-) 1125 WP_013449288.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NLA_RS07955 (NLA_15320) comL 1651615..1652421 (+) 807 WP_013449289.1 outer membrane protein assembly factor BamD Machinery gene
  NLA_RS07960 (NLA_15330) comA 1652491..1654710 (-) 2220 WP_080558280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NLA_RS07965 (NLA_15340) trpB 1654837..1656039 (-) 1203 WP_013449291.1 tryptophan synthase subunit beta -
  NLA_RS07970 (NLA_15350) - 1656121..1656681 (-) 561 WP_231844381.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30618.75 Da        Isoelectric Point: 8.6962

>NTDB_id=39075 NLA_RS07955 WP_013449289.1 1651615..1652421(+) (comL) [Neisseria lactamica 020-06]
MKKILLMVSLSLALCACASSQGTVDKDTQTTQGWGVEKLYAEAQDELGGGNYTRAVKLYEILGSRFPTGRYAQQALLDTA
YAYYKDDEKDKALAAIDRFRNLYPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRFPD
SKYAADASARMIKLVDALGGNEMAVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRR
VLETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 807 bp        

>NTDB_id=39075 NLA_RS07955 WP_013449289.1 1651615..1652421(+) (comL) [Neisseria lactamica 020-06]
ATGAAAAAAATTCTTTTAATGGTTTCGTTAAGTTTGGCACTGTGCGCCTGTGCAAGCAGCCAAGGCACGGTCGACAAAGA
TACCCAAACGACCCAAGGCTGGGGCGTGGAAAAACTCTATGCCGAAGCGCAAGACGAGTTGGGCGGCGGCAATTATACGC
GCGCCGTCAAATTATACGAAATATTGGGCTCGCGCTTCCCGACCGGCCGCTACGCGCAACAGGCGTTGCTGGATACGGCC
TACGCCTATTATAAAGACGACGAAAAAGACAAGGCGCTGGCGGCAATCGACCGCTTCCGCAACCTCTACCCGCAGCATCC
GAATATGGATTACGCGCTGTACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGC
AAGACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAAGCGTATCAGGCTTTTGCGGAACTCGTCCGGCGTTTCCCCGAC
AGCAAATACGCCGCCGATGCGTCCGCGCGTATGATCAAACTGGTCGATGCCTTGGGCGGAAATGAAATGGCGGTTGCCCG
TTATTATATGAAACGCGGCGCATATATCGCCGCCGCCAACCGTGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGCT
ATGTCGAAGAATCGCTCGCCATCTTGGAACTCGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGACACACGCCGC
GTGTTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTG
GCATTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378VKF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

88.806

100

0.888
  comL Neisseria meningitidis MC58

88.06

100

0.881

Multiple sequence alignment