Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMBM01240355_RS11810 Genome accession   NC_017517
Coordinates   22743..23147 (-) Length   134 a.a.
NCBI ID   WP_014581680.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17743..28147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS00100 (NMBM01240355_0020) pilE 18229..18660 (-) 432 WP_220186514.1 pilin Machinery gene
  NMBM01240355_RS00105 (NMBM01240355_0021) - 18890..19287 (-) 398 Protein_18 pilin -
  NMBM01240355_RS00110 (NMBM01240355_0022) - 19397..19813 (-) 417 Protein_19 pilin -
  NMBM01240355_RS00115 (NMBM01240355_0023) - 19996..20406 (-) 411 Protein_20 pilin -
  NMBM01240355_RS00120 (NMBM01240355_0024) - 20639..21058 (-) 420 Protein_21 pilin -
  NMBM01240355_RS13950 (NMBM01240355_0025) - 21380..21661 (-) 282 Protein_22 pilin -
  NMBM01240355_RS00130 (NMBM01240355_0026) - 21875..22270 (-) 396 Protein_23 pilin -
  NMBM01240355_RS00135 (NMBM01240355_0027) - 22404..22738 (-) 335 Protein_24 pilin -
  NMBM01240355_RS11810 (NMBM01240355_0028) pilE 22743..23147 (-) 405 WP_014581680.1 pilin Machinery gene
  NMBM01240355_RS00145 (NMBM01240355_0029) - 23100..24133 (+) 1034 Protein_26 IS5 family transposase -
  NMBM01240355_RS15570 - 24269..24391 (-) 123 Protein_27 pilin -
  NMBM01240355_RS00150 (NMBM01240355_0030) - 24848..25105 (-) 258 Protein_28 pilin -
  NMBM01240355_RS00155 (NMBM01240355_0031) - 25134..25463 (-) 330 WP_014581682.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NMBM01240355_RS16270 - 25541..25627 (-) 87 Protein_30 DUF2061 domain-containing protein -
  NMBM01240355_RS15575 - 25715..25912 (-) 198 WP_002242127.1 DUF2061 domain-containing protein -
  NMBM01240355_RS00170 (NMBM01240355_0032) - 26034..26987 (+) 954 WP_014581683.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14122.66 Da        Isoelectric Point: 7.4030

>NTDB_id=39076 NMBM01240355_RS11810 WP_014581680.1 22743..23147(-) (pilE) [Neisseria meningitidis M01-240355]
MFGNHGLGGLLEEGAHGKSPKCHGGNLGDFGEFCKGLGKYVKEVTVANGVVTATMLSSGVNKEIQGRKLSLWAKRQDGSV
KWFCGQPVTRDKADADADADAVTADTAAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 405 bp        

>NTDB_id=39076 NMBM01240355_RS11810 WP_014581680.1 22743..23147(-) (pilE) [Neisseria meningitidis M01-240355]
GTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGGAAAATCCCCTAAATGTCATGGTGGGAATTT
AGGGGATTTTGGGGAATTTTGCAAAGGTCTCGGAAAATATGTTAAGGAAGTTACAGTCGCAAACGGCGTCGTTACCGCCA
CAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAGAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGACGCCGACGCCGACGCCGACGCCGTTACCGCCGACACCGC
CGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAGTGGGAATGACGGGA
TTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(38-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.75

59.701

0.41
  pilE Neisseria gonorrhoeae strain FA1090

66.25

59.701

0.396

Multiple sequence alignment