Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NLA_RS07960 Genome accession   NC_014752
Coordinates   1652491..1654710 (-) Length   739 a.a.
NCBI ID   WP_080558280.1    Uniprot ID   -
Organism   Neisseria lactamica 020-06     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1647491..1659710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07935 (NLA_15270) lptE 1647628..1648107 (-) 480 WP_013449285.1 LPS assembly lipoprotein LptE -
  NLA_RS07940 (NLA_15280) pgeF 1648159..1648938 (-) 780 WP_013449286.1 peptidoglycan editing factor PgeF -
  NLA_RS11795 - 1649091..1649315 (+) 225 WP_231844348.1 hypothetical protein -
  NLA_RS07945 (NLA_15290) - 1649392..1650339 (+) 948 WP_013449287.1 bile acid:sodium symporter family protein -
  NLA_RS07950 (NLA_15310) rluD 1650492..1651616 (-) 1125 WP_013449288.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NLA_RS07955 (NLA_15320) comL 1651615..1652421 (+) 807 WP_013449289.1 outer membrane protein assembly factor BamD Machinery gene
  NLA_RS07960 (NLA_15330) comA 1652491..1654710 (-) 2220 WP_080558280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NLA_RS07965 (NLA_15340) trpB 1654837..1656039 (-) 1203 WP_013449291.1 tryptophan synthase subunit beta -
  NLA_RS07970 (NLA_15350) - 1656121..1656681 (-) 561 WP_231844381.1 uracil-DNA glycosylase family protein -
  NLA_RS07975 (NLA_15360) rsmA 1657027..1657806 (+) 780 WP_013449293.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  NLA_RS07980 (NLA_15370) - 1657821..1658390 (+) 570 WP_013449294.1 GTP pyrophosphokinase -
  NLA_RS07985 (NLA_15380) - 1658501..1658956 (+) 456 WP_013449295.1 hypothetical protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80020.55 Da        Isoelectric Point: 10.0187

>NTDB_id=39076 NLA_RS07960 WP_080558280.1 1652491..1654710(-) (comA) [Neisseria lactamica 020-06]
MFRRWFLPCWVVGAAASFALPSVPHWLFWLAAFAVFAVFARRFAFAGLMLCVLAGAAYSVFRTEAALSSQWRAEAVSGVP
LTVEVADMPRSDGRRVQFAAKAEDDGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
GTVGADRVLLHDGSGWGIAVWRSRISRNWRQADADGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVMFAWLAKRLLACSPRLPTRPRVWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLPAWATWWQALA
AVLLFDPSAVLGVGTWLSFGLVAALIWACSGRLHEGKQQTALRGQWAASVLSLVLLGYLFASLPLVSPLVNAVAIPWFSW
VLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLPLLVLAVCAALLLLLPRGLGLRPWAVLLLAG
FVFYRPPGVPENEAAVTVWDAGQGLSVSVQTANHHLLFDTGTALAAQTGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQA
VGKIPNGGIYAGQPEFYEGARHCAERHWQWDGVDFEFLRPSERKNIDDNGKSCVLRVVAGGAALLVTGDLDTKGEESLVG
KYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYANAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGG
VKAQRLRGYKFYWQKKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=39076 NLA_RS07960 WP_080558280.1 1652491..1654710(-) (comA) [Neisseria lactamica 020-06]
GTGTTCCGTCGTTGGTTTTTGCCGTGTTGGGTCGTCGGCGCGGCGGCTTCGTTCGCGCTGCCGTCCGTGCCGCATTGGCT
GTTTTGGCTGGCGGCTTTTGCGGTTTTTGCTGTGTTTGCAAGGCGGTTTGCGTTTGCCGGTCTGATGCTGTGCGTGTTGG
CGGGCGCGGCTTACAGCGTATTCAGAACGGAAGCGGCACTGTCTTCGCAATGGCGGGCGGAGGCGGTTTCAGGCGTGCCG
TTGACGGTGGAAGTGGCGGATATGCCGAGGTCGGACGGGCGGCGCGTGCAGTTTGCTGCAAAGGCGGAGGATGACGGTGG
TCGGACGTTTGATTTGCTGCTGTCGGACTACAAACGGCGCGAATGGGCGGTCGGGAGCAGATGGCGGATAACGGCACGTG
TGCACCCCGTCGTCGGGGAGTTGAACCTGCGCGGTTTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGTGCG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGCATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGCATCAGCCG
TAATTGGCGGCAGGCGGATGCGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGGCCGTTGGGGCTGACGCATCTGGTCAGTATTTCGGGTTTGCACGTT
ACGATGGTGGCGGTGATGTTTGCGTGGCTGGCGAAGCGGCTGCTTGCCTGTTCCCCGCGCCTTCCCACCCGGCCGCGCGT
GTGGGTTTTGGCGGCGGGGTGTGCAGGCGCGCTGTTTTACGCGCTGCTTGCCGGTTTTTCCGTGCCGACGCAGCGCAGTG
TTTTGATGTTGGCGGCGTTTGCGTGGGCGTGGCGCAGGGGAAGGCTGCCGGCGTGGGCGACGTGGTGGCAGGCGTTGGCG
GCGGTGCTGCTGTTCGACCCGTCGGCAGTTTTGGGTGTGGGAACTTGGCTGTCTTTCGGTTTGGTGGCGGCCCTGATATG
GGCGTGTTCGGGGCGTTTGCACGAGGGGAAACAGCAAACCGCTTTGCGCGGACAGTGGGCGGCTTCGGTGTTGTCGTTGG
TTTTGCTCGGTTATCTGTTTGCTTCGCTGCCTTTGGTCAGCCCTTTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGG
GTATTGACGCCGCTGGCGTTGCTGGGTTCGGTCGTGCCGTTTGCGCCTTTGCAACAGTTGGGGGCATTTTTGGCGGAATA
CACTTTGCGGTTTTTGGTGTGGCTTGCCGATGTGTCGCCCGAGTTTGCCGTTGCCTCCGCACCTTTGCCGCTGTTGGTGT
TGGCGGTGTGTGCAGCTTTGCTGTTGCTGCTGCCGCGCGGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGGCAGGG
TTTGTGTTTTACCGTCCGCCCGGCGTGCCGGAAAATGAGGCTGCGGTTACGGTTTGGGATGCGGGGCAGGGTTTGTCGGT
GTCGGTTCAGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATTGGCGGCACAGACGGGGATTGTGCCGAGTT
TGAATGCGGCGGGTGTCCGCCGTTTGGACAAGCTGGTTCTGTCGCATCACGACAGCGACCACGACGGCGGTTTTCAGGCA
GTCGGCAAGATACCGAACGGCGGGATTTATGCCGGGCAGCCGGAATTTTATGAGGGGGCGCGGCATTGTGCGGAACGGCA
TTGGCAATGGGACGGCGTGGATTTCGAGTTTTTGAGGCCGTCTGAACGCAAAAACATCGATGATAATGGGAAAAGTTGTG
TTTTGCGTGTTGTGGCTGGTGGTGCGGCACTGCTGGTAACGGGCGATTTGGATACGAAGGGTGAGGAAAGCCTGGTCGGC
AAGTATGGAGGCAACCTGTACAGCCAGGTTTTGGTGTTGGGGCATCACGGCAGCAATACGTCCTCGTCGGGCGTGTTCCT
CAATGCCGTCTCGCCCGAATATGCCGTTGCTTCAAGCGGTTATGCCAACGCCTACAAACATCCGACCGAAGCGGTGCAAA
ACCGTGTTCGCGCACACGGTATCAAGTTGTTGCGTACCGATTTGTCGGGCGCGCTGCAATTCGGCTTGGGACGCGGCGGC
GTGAAGGCCCAACGTTTGAGAGGGTATAAATTCTATTGGCAGAAAAAACCGTTTGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-677)

Domain of unknown function (DUF4131) (DUF4131)

(10-167)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

94.858

100

0.949

Multiple sequence alignment