Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F8M43_RS21440 Genome accession   NZ_CP044498
Coordinates   4109603..4110121 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ms-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4104603..4115121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS21410 yyaJ 4105105..4106460 (+) 1356 WP_029318525.1 MFS transporter -
  F8M43_RS21415 maa 4106494..4107048 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  F8M43_RS21420 yyaH 4107066..4107446 (-) 381 WP_029726089.1 VOC family protein -
  F8M43_RS21425 ccpB 4107502..4108437 (-) 936 WP_029726088.1 transcriptional regulator CcpB -
  F8M43_RS21430 xth 4108497..4109255 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  F8M43_RS21435 rpsR 4109320..4109559 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  F8M43_RS21440 ssbA 4109603..4110121 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  F8M43_RS21445 rpsF 4110162..4110449 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  F8M43_RS21450 ychF 4110560..4111660 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  F8M43_RS21455 yyaE 4111787..4113790 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  F8M43_RS21460 yyzM 4113841..4114047 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=390600 F8M43_RS21440 WP_003219228.1 4109603..4110121(-) (ssbA) [Bacillus subtilis strain ms-2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=390600 F8M43_RS21440 WP_003219228.1 4109603..4110121(-) (ssbA) [Bacillus subtilis strain ms-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment