Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NMBM01240355_RS06390 Genome accession   NC_017517
Coordinates   1208939..1209970 (+) Length   343 a.a.
NCBI ID   WP_014582025.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203939..1214970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS06370 (NMBM01240355_1158) - 1204850..1205224 (-) 375 WP_014582022.1 arsenate reductase -
  NMBM01240355_RS06375 (NMBM01240355_1159) - 1205373..1207001 (+) 1629 WP_014582023.1 ABC-F family ATPase -
  NMBM01240355_RS06380 (NMBM01240355_1160) - 1207073..1208326 (+) 1254 WP_014582024.1 multifunctional CCA addition/repair protein -
  NMBM01240355_RS06385 (NMBM01240355_1161) - 1208549..1208857 (+) 309 WP_002213494.1 hypothetical protein -
  NMBM01240355_RS06390 (NMBM01240355_1162) ruvB 1208939..1209970 (+) 1032 WP_014582025.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NMBM01240355_RS06395 (NMBM01240355_1163) rpe 1209993..1210721 (-) 729 WP_002213492.1 ribulose-phosphate 3-epimerase -
  NMBM01240355_RS06400 (NMBM01240355_1164) - 1211031..1211465 (+) 435 WP_002229506.1 Spy/CpxP family protein refolding chaperone -
  NMBM01240355_RS06405 (NMBM01240355_1165) - 1211478..1212341 (-) 864 WP_002243531.1 ATP-binding protein -
  NMBM01240355_RS15730 (NMBM01240355_1166) - 1212349..1212966 (-) 618 WP_002217135.1 riboflavin synthase -
  NMBM01240355_RS15735 (NMBM01240355_1167) - 1213129..1213743 (-) 615 WP_015815602.1 molybdenum cofactor guanylyltransferase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37668.15 Da        Isoelectric Point: 5.2966

>NTDB_id=39046 NMBM01240355_RS06390 WP_014582025.1 1208939..1209970(+) (ruvB) [Neisseria meningitidis M01-240355]
MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL
AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIVSRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVR
DFADVKNNGTIDGGIADAALSMLDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFL
QRTPRGRMATERAYLHFGLPVEK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=39046 NMBM01240355_RS06390 WP_014582025.1 1208939..1209970(+) (ruvB) [Neisseria meningitidis M01-240355]
ATGCTGCAAACCGACAACCTGACCGCCGCGCAACCGCAACGCATCGTTGCCGCCCAAACCGCCTCCGCACAGGAAGAACT
GCTCGAACGCGCCCTCCGCCCCAAAACGCTGGACGACTACATCGGGCAGCATAAAGCCAAAGAACAGCTTGCCATTTTCA
TCCAAGCCGCCAAAAAACGCGGCGAAGCACTCGACCACGTTTTGCTCTTCGGCCCGCCCGGACTGGGCAAAACCACACTG
GCGCACATCATCGCCAAAGAATTGGGCGTAAATTTGCGCCAAACCAGCGGCCCCGTCCTCGAACGCGCAGGCGACCTCGC
CGCCCTTTTGACCAACCTTGATCCGCACGATGTATTGTTCATCGACGAAATCCACCGCCTCAGCCCTGTTGTCGAAGAAA
TCCTCTATCCCGCGCTCGAAGACTACCGGCTCGACATTATGATAGGCGAAGGACCCGCCGCCCGTTCCGTCAAAATCGAC
CTGCCGCCCTTCACCCTCGTCGGTGCGACCACTCGCGCAGGTATGCTGACCAATCCGTTGCGCGACCGCTTCGGCATCGT
CTCCCGCCTTGAGTTTTACGAAAACCGAGACCTTACCACCATCGTCAGCCGTTCGGCACAACTGTTGCAGCTCGATATGT
CCGAAGAAGGCGCGGAAGAAATCGCCAAACGCAGCCGCGGTACGCCGCGCATCGCCAACCGCCTGTTGCGACGCGTGCGC
GATTTCGCCGACGTGAAAAACAACGGCACAATCGACGGCGGCATCGCCGATGCCGCTTTAAGTATGCTGGACGTGGACGC
GCAGGGGCTGGACGTGATGGACAGGAAATTTCTCGAAGCCGTTTTGCACAAATTCGGCGGCGGCCCCGTCGGTTTGGACA
ACGTTGCCGCCGCCATCGGCGAATCTACAGACACCATCGAAGACGTTATCGAACCCTACCTTATCCAACAAGGCTTCCTG
CAACGCACCCCGCGCGGCAGGATGGCGACCGAACGCGCCTACCTGCATTTCGGGCTGCCCGTCGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-337)

RuvB AAA lid domain (AAA_lid_4)

(193-266)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(32-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.162

95.335

0.583
  ruvB Streptococcus pneumoniae TIGR4

62.739

91.545

0.574
  ruvB Streptococcus pneumoniae R6

62.739

91.545

0.574
  ruvB Streptococcus pneumoniae D39

62.739

91.545

0.574
  ruvB Synechocystis sp. PCC 6803

54.878

95.627

0.525
  ruvB Helicobacter pylori 26695

57.188

91.254

0.522

Multiple sequence alignment