Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FSA40_RS05325 Genome accession   NZ_CP044493
Coordinates   1055168..1055857 (-) Length   229 a.a.
NCBI ID   WP_002272187.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050168..1060857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS05295 (FSA40_1048) - 1050419..1051177 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  FSA40_RS05300 (FSA40_1049) - 1051167..1051445 (-) 279 WP_002265496.1 UPF0223 family protein -
  FSA40_RS05305 (FSA40_1050) spx 1051438..1051851 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  FSA40_RS05310 (FSA40_1051) - 1051912..1052832 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  FSA40_RS05315 (FSA40_1052) truB 1052863..1053744 (-) 882 WP_002271102.1 tRNA pseudouridine(55) synthase TruB -
  FSA40_RS05320 (FSA40_1053) scnK 1053854..1055167 (-) 1314 WP_151416305.1 HAMP domain-containing sensor histidine kinase Regulator
  FSA40_RS05325 (FSA40_1054) scnR 1055168..1055857 (-) 690 WP_002272187.1 response regulator transcription factor Regulator
  FSA40_RS05335 (FSA40_1055) - 1056032..1056940 (+) 909 WP_002286912.1 ABC transporter ATP-binding protein -
  FSA40_RS05340 (FSA40_1056) - 1056940..1057680 (+) 741 WP_002265501.1 ABC transporter permease -
  FSA40_RS05345 (FSA40_1057) - 1057677..1058405 (+) 729 WP_151416306.1 ABC transporter permease -
  FSA40_RS05350 (FSA40_1058) - 1058532..1059893 (-) 1362 WP_172964887.1 DUF438 domain-containing protein -
  FSA40_RS05355 (FSA40_1059) - 1059893..1060126 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26261.61 Da        Isoelectric Point: 6.9650

>NTDB_id=390372 FSA40_RS05325 WP_002272187.1 1055168..1055857(-) (scnR) [Streptococcus mutans strain MD]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=390372 FSA40_RS05325 WP_002272187.1 1055168..1055857(-) (scnR) [Streptococcus mutans strain MD]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.563

100

0.996
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment