Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   FSA40_RS05320 Genome accession   NZ_CP044493
Coordinates   1053854..1055167 (-) Length   437 a.a.
NCBI ID   WP_151416305.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048854..1060167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS05290 (FSA40_1047) - 1049051..1050355 (-) 1305 WP_002308194.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FSA40_RS05295 (FSA40_1048) - 1050419..1051177 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  FSA40_RS05300 (FSA40_1049) - 1051167..1051445 (-) 279 WP_002265496.1 UPF0223 family protein -
  FSA40_RS05305 (FSA40_1050) spx 1051438..1051851 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  FSA40_RS05310 (FSA40_1051) - 1051912..1052832 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  FSA40_RS05315 (FSA40_1052) truB 1052863..1053744 (-) 882 WP_002271102.1 tRNA pseudouridine(55) synthase TruB -
  FSA40_RS05320 (FSA40_1053) scnK 1053854..1055167 (-) 1314 WP_151416305.1 HAMP domain-containing sensor histidine kinase Regulator
  FSA40_RS05325 (FSA40_1054) scnR 1055168..1055857 (-) 690 WP_002272187.1 response regulator transcription factor Regulator
  FSA40_RS05335 (FSA40_1055) - 1056032..1056940 (+) 909 WP_002286912.1 ABC transporter ATP-binding protein -
  FSA40_RS05340 (FSA40_1056) - 1056940..1057680 (+) 741 WP_002265501.1 ABC transporter permease -
  FSA40_RS05345 (FSA40_1057) - 1057677..1058405 (+) 729 WP_151416306.1 ABC transporter permease -
  FSA40_RS05350 (FSA40_1058) - 1058532..1059893 (-) 1362 WP_172964887.1 DUF438 domain-containing protein -
  FSA40_RS05355 (FSA40_1059) - 1059893..1060126 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50406.37 Da        Isoelectric Point: 9.6135

>NTDB_id=390371 FSA40_RS05320 WP_151416305.1 1053854..1055167(-) (scnK) [Streptococcus mutans strain MD]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKITQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSRSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGDATLLERAFRNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPVTDEF

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=390371 FSA40_RS05320 WP_151416305.1 1053854..1055167(-) (scnK) [Streptococcus mutans strain MD]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCACTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTACC
CTAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGTCGTTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCTTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTCCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCAGTATTGGTAAAGGGTGATGCTACTTTACTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTCTTGCCTGTAACGGATGAATTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

98.856

100

0.989

Multiple sequence alignment