Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FSC11_RS00805 Genome accession   NZ_CP044483
Coordinates   171774..172913 (-) Length   379 a.a.
NCBI ID   WP_163164594.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 166774..177913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS00780 (FSC11_00780) - 167691..168299 (-) 609 WP_163164586.1 hypothetical protein -
  FSC11_RS00785 (FSC11_00785) - 168459..168839 (-) 381 WP_163164588.1 RcnB family protein -
  FSC11_RS00790 (FSC11_00790) - 169052..169597 (-) 546 WP_004814265.1 glutathione peroxidase -
  FSC11_RS00795 (FSC11_00795) - 169821..170720 (+) 900 WP_163164590.1 DMT family transporter -
  FSC11_RS00800 (FSC11_00800) - 171158..171733 (-) 576 WP_163164592.1 L-threonylcarbamoyladenylate synthase -
  FSC11_RS00805 (FSC11_00805) dprA 171774..172913 (-) 1140 WP_163164594.1 DNA-processing protein DprA Machinery gene
  FSC11_RS00810 (FSC11_00810) tsaP 173006..174160 (-) 1155 WP_163164596.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC11_RS00815 (FSC11_00815) def 174281..174811 (+) 531 WP_005220256.1 peptide deformylase -
  FSC11_RS00820 (FSC11_00820) - 174904..175323 (+) 420 WP_163164598.1 DUF2946 family protein -
  FSC11_RS00825 (FSC11_00825) - 175395..177425 (+) 2031 WP_163164601.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42509.23 Da        Isoelectric Point: 6.1827

>NTDB_id=390230 FSC11_RS00805 WP_163164594.1 171774..172913(-) (dprA) [Acinetobacter schindleri strain HZE30-1]
MLNSLSTTQLDNIRLWYVVQHSLTSFYRLSDYYENLADAVQPDQVETWLKLGVHKNHIQRLQDFNCKDSQREFQSCLEKI
QKTCDFILLHNEVDYPQQLGHYIDKPPIVFGQGKADSLLQAQVAIVGSRKPSNHGRQMAYDFAYYLSEQGFYINSGLAQG
IDEAAHRAALQQHRTIAVMGTGLDQTYPVTNQPLKEQIIAQGGTVITEFLPGTPPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAVPGHIYSENHKGCHQLIREGAILIDHPHQVVEDLALATQWQAAEQIYKAENSETELIEI
PAHLIPLYNQLDWIGQDLDQISIQLSQDVSTITAQLMELELLGFSTQQAGMFLRCRTGK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=390230 FSC11_RS00805 WP_163164594.1 171774..172913(-) (dprA) [Acinetobacter schindleri strain HZE30-1]
ATGTTGAATTCGTTATCTACGACTCAACTGGACAACATTCGCTTATGGTATGTAGTCCAGCATTCCCTCACCAGTTTCTA
TCGCTTATCTGATTATTATGAAAATCTTGCTGATGCTGTTCAGCCGGATCAAGTCGAGACCTGGCTAAAATTAGGGGTTC
ATAAAAATCATATCCAGCGGCTTCAGGATTTCAATTGCAAAGATTCCCAGCGCGAGTTTCAGTCTTGTCTGGAAAAGATC
CAGAAAACTTGCGACTTTATTTTATTACATAATGAAGTGGATTATCCGCAGCAGCTCGGTCACTACATCGATAAACCGCC
GATTGTATTTGGTCAGGGTAAGGCCGACAGTTTATTACAGGCACAGGTGGCAATTGTGGGCAGCCGTAAACCGAGCAATC
ACGGTCGTCAGATGGCTTATGATTTTGCGTATTACTTAAGTGAACAAGGTTTTTATATCAATAGTGGACTGGCGCAAGGC
ATTGATGAAGCGGCACATCGGGCAGCGCTGCAGCAGCATCGTACTATTGCAGTGATGGGTACGGGTCTGGATCAAACCTA
TCCGGTAACAAATCAGCCATTAAAAGAACAGATCATTGCCCAAGGCGGCACGGTGATTACAGAATTTTTACCTGGTACTC
CGCCTCTGCAACATCATTTTCCACGGCGTAACCGTATTGTCAGTGGACTGAGTCTGGGTGTTATTGTGGCTGAAGCTGCA
CTGAAAAGTGGCTCACTCATCACCGCCAAACTGGCTGCCGAACAAGGAAAAACCGTGTTTGCGGTTCCTGGACATATCTA
CAGTGAAAATCACAAAGGCTGTCACCAGCTCATCCGCGAAGGTGCAATTTTGATTGATCATCCACACCAGGTGGTTGAAG
ATCTGGCATTAGCCACCCAATGGCAGGCAGCTGAACAAATTTATAAAGCAGAAAATAGTGAAACCGAATTGATCGAGATT
CCAGCACACCTGATTCCGCTCTACAACCAGCTCGACTGGATCGGACAAGACCTAGATCAGATCAGCATTCAACTCAGCCA
GGATGTTTCCACAATCACAGCACAGTTGATGGAACTGGAATTACTCGGTTTCAGTACACAGCAAGCCGGTATGTTTCTAC
GTTGTCGTACAGGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

60.212

99.472

0.599

  dprA Acinetobacter baumannii D1279779

59.947

99.472

0.596

  dprA Acinetobacter baylyi ADP1

56.955

100

0.573


Multiple sequence alignment