Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FSC11_RS00810 Genome accession   NZ_CP044483
Coordinates   173006..174160 (-) Length   384 a.a.
NCBI ID   WP_163164596.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168006..179160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS00785 (FSC11_00785) - 168459..168839 (-) 381 WP_163164588.1 RcnB family protein -
  FSC11_RS00790 (FSC11_00790) - 169052..169597 (-) 546 WP_004814265.1 glutathione peroxidase -
  FSC11_RS00795 (FSC11_00795) - 169821..170720 (+) 900 WP_163164590.1 DMT family transporter -
  FSC11_RS00800 (FSC11_00800) - 171158..171733 (-) 576 WP_163164592.1 L-threonylcarbamoyladenylate synthase -
  FSC11_RS00805 (FSC11_00805) dprA 171774..172913 (-) 1140 WP_163164594.1 DNA-processing protein DprA Machinery gene
  FSC11_RS00810 (FSC11_00810) tsaP 173006..174160 (-) 1155 WP_163164596.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC11_RS00815 (FSC11_00815) def 174281..174811 (+) 531 WP_005220256.1 peptide deformylase -
  FSC11_RS00820 (FSC11_00820) - 174904..175323 (+) 420 WP_163164598.1 DUF2946 family protein -
  FSC11_RS00825 (FSC11_00825) - 175395..177425 (+) 2031 WP_163164601.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42130.40 Da        Isoelectric Point: 9.0719

>NTDB_id=390231 FSC11_RS00810 WP_163164596.1 173006..174160(-) (tsaP) [Acinetobacter schindleri strain HZE30-1]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTIHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=390231 FSC11_RS00810 WP_163164596.1 173006..174160(-) (tsaP) [Acinetobacter schindleri strain HZE30-1]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAACTATACATGCAGCACCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAAAATCCACACTGGATTTTTCCAGGTGACCGTCTGCTGATGTGCGATTA
CCAGGGCCGCCCAATCATTGGTAAAGATGAAGGCGATGGCTGTACCGGTATCATCAATCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTACGTATTGAATCGCTCAACAATACCATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCATATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGGAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ACATACTGACTGATGCCAATGGTAAAAAATACACCGCTGCCCTAGAACTACAGCAGGTCGCTTCTGGTATTGCAGTCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGACAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGCGGCATAGCACATGGTGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAACGTGTACAGCTCCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTTCTAGACAGTGAATTGCCAATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685

Multiple sequence alignment