Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FSC12_RS09085 Genome accession   NZ_CP044474
Coordinates   1921679..1922398 (+) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1916679..1927398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS09070 (FSC12_09150) ponA 1917288..1919816 (-) 2529 WP_163169080.1 penicillin-binding protein PBP1a -
  FSC12_RS09075 (FSC12_09155) pilM 1919986..1921044 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  FSC12_RS09080 (FSC12_09160) comN 1921044..1921685 (+) 642 WP_163169081.1 PilN domain-containing protein Machinery gene
  FSC12_RS09085 (FSC12_09165) comO 1921679..1922398 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC12_RS09090 (FSC12_09170) pilP 1922398..1922925 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  FSC12_RS09095 (FSC12_09175) pilQ 1922942..1925029 (+) 2088 WP_163169082.1 type IV pilus secretin PilQ family protein Machinery gene
  FSC12_RS09100 (FSC12_09180) aroK 1925066..1925602 (+) 537 WP_004810003.1 shikimate kinase AroK -
  FSC12_RS09105 (FSC12_09185) aroB 1925630..1926709 (+) 1080 WP_163169083.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=390214 FSC12_RS09085 WP_026056744.1 1921679..1922398(+) (comO) [Acinetobacter schindleri strain HZE33-1]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=390214 FSC12_RS09085 WP_026056744.1 1921679..1922398(+) (comO) [Acinetobacter schindleri strain HZE33-1]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTTCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCACAAGAA
CAGAATCTATTAAATGAATTTCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAGCAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGCCTGGTTGAAGATATTAACTTGA
GTGGTGTCAATGCCGGACTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAGCAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGTATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGACTTTACGATTACGGGTACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCCAACTCAGCATCGGCAGATACAACAGCTGCGAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649

Multiple sequence alignment