Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FSC12_RS09095 Genome accession   NZ_CP044474
Coordinates   1922942..1925029 (+) Length   695 a.a.
NCBI ID   WP_163169082.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1917942..1930029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS09075 (FSC12_09155) pilM 1919986..1921044 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  FSC12_RS09080 (FSC12_09160) comN 1921044..1921685 (+) 642 WP_163169081.1 PilN domain-containing protein Machinery gene
  FSC12_RS09085 (FSC12_09165) comO 1921679..1922398 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC12_RS09090 (FSC12_09170) pilP 1922398..1922925 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  FSC12_RS09095 (FSC12_09175) pilQ 1922942..1925029 (+) 2088 WP_163169082.1 type IV pilus secretin PilQ family protein Machinery gene
  FSC12_RS09100 (FSC12_09180) aroK 1925066..1925602 (+) 537 WP_004810003.1 shikimate kinase AroK -
  FSC12_RS09105 (FSC12_09185) aroB 1925630..1926709 (+) 1080 WP_163169083.1 3-dehydroquinate synthase -
  FSC12_RS09110 (FSC12_09190) - 1926723..1927565 (+) 843 WP_163169084.1 hypothetical protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75772.79 Da        Isoelectric Point: 5.6697

>NTDB_id=390216 FSC12_RS09095 WP_163169082.1 1922942..1925029(+) (pilQ) [Acinetobacter schindleri strain HZE33-1]
MNKSFKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAKQNLKQSSIAVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSTNPVIPVQPVVQQNTQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKVIVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNTLRPKAVQHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYIQLSYAKAADIEKLITQNKGSSGS
NSSSSDDKGTLLSSRGSISVDSRTNTLIVNDTQQFVDKIRNMIDLLDVQVKQVMVEARIVTAETNFSRDLGIRWGLQRNN
PSLSAGPNGSNVWGGDYSPKLDLSVDLGTATAGTFNFGLLKISDYMLDLQLTALQTDGLGEVLSAPKIMTGDKQKAYILR
GTEIPYQTWSAEGGTTTSFKEANLRLDVTPSITPDGKVQMELQIEKDSVGTITSEGPSINTNELQTNVLVGDGETVVLGG
IFDDIRANNYQKVPFLGDLPVIGNFFKSNSRTSNQAELLIFITPRIVNDSVSRNH

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=390216 FSC12_RS09095 WP_163169082.1 1922942..1925029(+) (pilQ) [Acinetobacter schindleri strain HZE33-1]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGC
AGTTGCCATTGCTGTTATGCAGGCGGCAAGTGCACAGGTTTCGATGACCAATGTGGTGCCAATGCAGATTCCAGGACAAG
GTACTGAAATTCGCGTGATGTTTAATGGCTTGCCACCTCAACCACAAGCTTATCAATTAGAATCACCATCACGTCTGATT
CTGGATTTTGATAAAGCAAAGCAGAATTTAAAACAAAGCAGTATTGCTGTTGCAACGAAAGAAGCAAGTTCTGTAGATGT
GACTTCAGATGCCCAGCGCGCACGTTTAACTGTGAATCTGGCTGATGCAGGTGCATTTACCACACGTGTTGAAGGCAATA
CCTTTATTCTAAAAATTAATTCAACCAATCCAGTTATCCCTGTACAGCCAGTCGTACAACAAAATACTCAAGGCATTACC
AATATTGGGTTCCAGCGCGGGGCGAAAGGTGAAGGTCAGGTCGTGATTGATCTGGCGAGCGGTAATACACCGGTTGATGT
GCAACAGCAAGGCACCAAAGTTATTGTACGGGCATTAGGCTCCAAGATCCCGGCACATTTAACCCGTCGTCTGAATGTGA
ATGATTTTGCTACACCTGTTTCGACAGTAGATGCAGTCAACCAGAATGGCTCTGGAGTGATTACCATTCAAACTTCAGAC
AGCTATGAATACATGGCTTATCAAACCGATAATAAACTGACAATTAGTTTAAAACGCCCAGAAGAGAAAAATACATTACG
TCCAAAAGCTGTTCAACATTATACAGGTAAGAAAATTTCTTTAGATTTTCAGGATATTGAAGTACGCCGAGTATTACAGC
TGCTAGCAGATTTTACTGACATTAATATGGTTGCAGCAGATAGCGTACAAGGCAATATTACTTTACGTCTTAAGGAAGTG
CCTTGGGATCAGGCTTTAGATATTGTTTTGAAAACCAAGAATTTGGATAAGCGCCGTAATGGGAATGTAATCTGGATTGC
GCCTGTATCTGAGCTGATTAAAGCTGAAGAAGAAGAAGCTAAAGCACTTGCACAAAGTGTGAAACTTGCTCCTATTCAGA
CTGAATATATACAACTCAGTTATGCCAAAGCCGCAGATATTGAGAAACTGATTACACAGAATAAAGGTTCCTCTGGAAGC
AATAGCTCAAGTAGTGATGATAAAGGAACTCTACTGAGTTCTCGGGGTTCTATTTCTGTGGATTCTCGAACTAATACTTT
GATTGTGAATGATACACAGCAGTTTGTTGATAAAATCAGGAATATGATAGATCTGCTTGATGTACAGGTAAAGCAGGTAA
TGGTTGAAGCACGTATTGTAACGGCAGAGACAAATTTTTCCCGTGATTTGGGTATACGATGGGGCTTGCAACGTAATAAC
CCTAGTTTAAGTGCTGGCCCTAATGGATCTAATGTTTGGGGTGGCGATTATTCTCCAAAATTAGATTTAAGTGTAGATTT
AGGTACAGCTACAGCAGGAACCTTTAACTTTGGATTGCTTAAAATATCTGACTATATGTTAGATTTACAGTTAACTGCCT
TACAGACAGATGGTTTAGGAGAGGTACTGTCTGCACCCAAGATTATGACTGGTGATAAGCAAAAAGCATATATTTTGCGT
GGAACAGAAATTCCATATCAAACGTGGAGTGCGGAAGGCGGAACAACAACTTCTTTTAAAGAGGCAAATTTAAGATTAGA
TGTAACTCCAAGTATTACACCAGATGGAAAAGTACAAATGGAGCTGCAAATTGAAAAAGATAGTGTAGGGACAATTACTT
CAGAAGGTCCATCAATTAATACGAATGAACTACAAACTAATGTATTAGTAGGTGATGGTGAAACTGTAGTATTAGGAGGA
ATATTTGATGATATTCGAGCTAATAACTATCAAAAAGTACCATTCTTAGGAGATTTGCCCGTTATCGGAAACTTCTTTAA
GAGTAATTCAAGAACTTCGAATCAAGCAGAGCTCCTGATTTTTATTACACCTCGAATTGTTAATGACAGTGTTTCAAGAA
ATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II and III secretion system protein (Secretin)

(533-687)

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.56

100

0.682
  pilQ Acinetobacter baumannii strain A118

65.422

100

0.681
  comQ Acinetobacter baylyi ADP1

64.045

100

0.656
  pilQ Pseudomonas aeruginosa PAK

42.213

98.849

0.417
  pilQ Legionella pneumophila strain Lp02

38.686

98.561

0.381
  pilQ Legionella pneumophila strain ERS1305867

38.881

97.698

0.38

Multiple sequence alignment