Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FSC10_RS01075 Genome accession   NZ_CP044463
Coordinates   213928..215067 (-) Length   379 a.a.
NCBI ID   WP_163170736.1    Uniprot ID   A0AAE7BVE6
Organism   Acinetobacter schindleri strain HZE23-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 208928..220067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01050 (FSC10_01065) - 209878..210486 (-) 609 WP_004814261.1 hypothetical protein -
  FSC10_RS01055 (FSC10_01070) - 210648..211028 (-) 381 WP_004814264.1 RcnB family protein -
  FSC10_RS01060 (FSC10_01075) - 211242..211787 (-) 546 WP_163170735.1 glutathione peroxidase -
  FSC10_RS01065 (FSC10_01080) - 212011..212922 (+) 912 WP_076754617.1 DMT family transporter -
  FSC10_RS01070 (FSC10_01090) - 213318..213887 (-) 570 WP_005220259.1 L-threonylcarbamoyladenylate synthase -
  FSC10_RS01075 (FSC10_01095) dprA 213928..215067 (-) 1140 WP_163170736.1 DNA-processing protein DprA Machinery gene
  FSC10_RS01080 (FSC10_01100) tsaP 215160..216314 (-) 1155 WP_163170737.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC10_RS01085 (FSC10_01105) def 216435..216965 (+) 531 WP_005220256.1 peptide deformylase -
  FSC10_RS01090 (FSC10_01110) - 217058..217477 (+) 420 WP_163170738.1 DUF2946 family protein -
  FSC10_RS01095 (FSC10_01115) - 217549..219570 (+) 2022 WP_163170739.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42411.13 Da        Isoelectric Point: 6.1821

>NTDB_id=390149 FSC10_RS01075 WP_163170736.1 213928..215067(-) (dprA) [Acinetobacter schindleri strain HZE23-1]
MLNSLSTTQLDNIRLWYVVQHSLTSFYRLSDYYENLADAVQPDQVETWLKLGIHKNHIQRLQDFNCKDAQREFQFCLEQI
QKTCDFILLHTEADYPQQLSHYADKPPIVFGQGKADSLLQAQVAIVGSRKPSNHGRQMAYDFAYYLSEQGFYINSGLAQG
IDEAAHRAALQQHRTIAVMGTGLDQTYPATSQPLKEQIIAQGGTVITEFLPGTPPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSENHKGCHQLIREGAILIDHPHQVVEDLALATQWQAAEQIYKAENSEPELIEI
PAHLIPLYNQLDWIGQGLDQISIQLSQDVSTITAQLMELELLGFSTQQAGMFLRCRTGK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=390149 FSC10_RS01075 WP_163170736.1 213928..215067(-) (dprA) [Acinetobacter schindleri strain HZE23-1]
ATGTTGAATTCGTTATCCACGACTCAACTGGACAACATTCGCTTATGGTATGTAGTCCAGCATTCCCTCACCAGTTTCTA
TCGCTTATCTGATTATTATGAAAATCTTGCTGATGCTGTTCAGCCGGATCAAGTCGAGACCTGGCTAAAACTAGGCATTC
ATAAAAATCACATCCAGCGGCTTCAGGATTTCAATTGCAAAGATGCCCAGCGCGAGTTTCAGTTTTGTCTGGAGCAGATC
CAGAAAACTTGCGACTTTATTTTATTACATACTGAAGCGGATTATCCTCAGCAACTGAGTCATTACGCCGATAAACCGCC
GATTGTATTTGGTCAGGGTAAAGCCGACAGTTTATTACAGGCACAGGTGGCAATTGTGGGCAGCCGCAAACCGAGCAATC
ACGGTCGTCAGATGGCTTATGATTTTGCGTATTACTTAAGTGAACAAGGTTTTTATATCAATAGTGGACTGGCGCAAGGC
ATTGATGAAGCGGCACATCGGGCAGCGCTGCAGCAGCATCGTACGATTGCAGTGATGGGCACGGGTCTGGATCAAACCTA
TCCGGCGACAAGTCAGCCATTAAAAGAACAGATCATTGCCCAAGGCGGCACGGTGATTACAGAATTTTTGCCCGGTACTC
CGCCTCTGCAACATCATTTTCCACGGCGTAACCGTATTGTAAGTGGACTGAGTCTGGGTGTTATTGTGGCTGAAGCTGCC
CTTAAAAGTGGCTCACTCATCACTGCCAAACTGGCTGCCGAACAAGGAAAAACCGTGTTTGCGATTCCCGGACATATCTA
CAGTGAAAATCACAAAGGCTGTCACCAGCTCATCCGCGAAGGTGCAATTCTGATTGATCATCCACACCAGGTGGTTGAAG
ATCTGGCATTAGCCACCCAATGGCAGGCAGCTGAACAAATTTACAAAGCAGAAAATAGTGAACCCGAATTGATCGAGATT
CCAGCACACCTGATTCCGCTCTACAACCAGCTCGACTGGATCGGACAAGGCCTAGATCAGATCAGCATTCAACTCAGCCA
GGATGTTTCCACAATCACAGCACAGTTGATGGAACTGGAATTACTCGGTTTCAGTACACAACAAGCCGGTATGTTTCTAC
GTTGTCGTACAGGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

60.477

99.472

0.602

  dprA Acinetobacter baumannii D1279779

60.212

99.472

0.599

  dprA Acinetobacter baylyi ADP1

56.693

100

0.57


Multiple sequence alignment