Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FSC10_RS01080 Genome accession   NZ_CP044463
Coordinates   215160..216314 (-) Length   384 a.a.
NCBI ID   WP_163170737.1    Uniprot ID   A0AAE7BVK4
Organism   Acinetobacter schindleri strain HZE23-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210160..221314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01055 (FSC10_01070) - 210648..211028 (-) 381 WP_004814264.1 RcnB family protein -
  FSC10_RS01060 (FSC10_01075) - 211242..211787 (-) 546 WP_163170735.1 glutathione peroxidase -
  FSC10_RS01065 (FSC10_01080) - 212011..212922 (+) 912 WP_076754617.1 DMT family transporter -
  FSC10_RS01070 (FSC10_01090) - 213318..213887 (-) 570 WP_005220259.1 L-threonylcarbamoyladenylate synthase -
  FSC10_RS01075 (FSC10_01095) dprA 213928..215067 (-) 1140 WP_163170736.1 DNA-processing protein DprA Machinery gene
  FSC10_RS01080 (FSC10_01100) tsaP 215160..216314 (-) 1155 WP_163170737.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC10_RS01085 (FSC10_01105) def 216435..216965 (+) 531 WP_005220256.1 peptide deformylase -
  FSC10_RS01090 (FSC10_01110) - 217058..217477 (+) 420 WP_163170738.1 DUF2946 family protein -
  FSC10_RS01095 (FSC10_01115) - 217549..219570 (+) 2022 WP_163170739.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42133.36 Da        Isoelectric Point: 9.0719

>NTDB_id=390150 FSC10_RS01080 WP_163170737.1 215160..216314(-) (tsaP) [Acinetobacter schindleri strain HZE23-1]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTTHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCAGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAAIELQQVASGIAIR
GEGDITTLELTDSYNAEVRRGDRVLQEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=390150 FSC10_RS01080 WP_163170737.1 215160..216314(-) (tsaP) [Acinetobacter schindleri strain HZE23-1]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAACTACACATGCAGCACCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAAAATCCACACTGGATTTTTCCAGGTGACCGTCTGCTGATGTGCGATTA
CCAGGGCCGCCCAATCATTGGTAAAGATGAAGGTGATGGCTGTGCCGGTATTATCAACCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTGCGTATCGAATCGCTCAACAATACTATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAA
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGCAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCTAATGGTAAAAAATACACTGCTGCTATAGAACTACAGCAGGTCGCTTCTGGTATTGCAATCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGACAGCTATAATGCTGAAGTCCGCCGTGGTGACCGGGTACTACAAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGTGGCATAGCACATGGCGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAGCGTGTGCAGCTTCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTCCTAGACAGTGAATTGCCGATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682

Multiple sequence alignment