Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPQ_RS11885 Genome accession   NC_014733
Coordinates   2491943..2492440 (-) Length   165 a.a.
NCBI ID   WP_013443195.1    Uniprot ID   -
Organism   Methylovorus sp. MP688     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2486943..2497440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPQ_RS11870 (MPQ_2428) - 2489348..2490772 (+) 1425 WP_013443192.1 efflux transporter outer membrane subunit -
  MPQ_RS11875 (MPQ_2429) - 2490849..2491715 (-) 867 WP_041362398.1 GyrI-like domain-containing protein -
  MPQ_RS11885 (MPQ_2431) ssb 2491943..2492440 (-) 498 WP_013443195.1 single-stranded DNA-binding protein Machinery gene
  MPQ_RS11890 (MPQ_2432) - 2492443..2493819 (-) 1377 WP_015830983.1 MFS transporter -
  MPQ_RS11895 (MPQ_2433) uvrA 2494047..2496860 (+) 2814 WP_013443197.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18113.05 Da        Isoelectric Point: 5.0420

>NTDB_id=39011 MPQ_RS11885 WP_013443195.1 2491943..2492440(-) (ssb) [Methylovorus sp. MP688]
MASVNKVILVGNLGRDPEMRYMPSGDALASFSIATTDTWKDKNGQKQERTEWHRISMFGKQAEIAGEYLKKGSSVYIEGR
LQTRKWQDKEGNERQTTEVVADRMQMLGARSGGGNAYEVMDEDQSASYQPRQSAAPAQARPAPAAATSKPAGGSGFDDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=39011 MPQ_RS11885 WP_013443195.1 2491943..2492440(-) (ssb) [Methylovorus sp. MP688]
ATGGCATCTGTGAACAAAGTTATTCTGGTCGGCAATCTGGGGCGTGACCCCGAAATGCGCTACATGCCATCCGGCGACGC
GCTGGCATCCTTCAGCATCGCCACCACCGACACCTGGAAAGATAAAAACGGCCAGAAACAGGAGCGCACCGAGTGGCATC
GCATCTCCATGTTTGGCAAGCAAGCCGAAATCGCCGGGGAGTACCTGAAAAAAGGCTCCAGCGTCTACATCGAAGGCCGC
CTGCAAACCCGCAAATGGCAAGATAAAGAAGGCAACGAACGCCAGACCACCGAAGTGGTTGCCGACCGCATGCAGATGCT
CGGCGCCCGCAGCGGCGGCGGCAATGCCTACGAAGTCATGGACGAAGATCAGTCTGCGTCGTACCAGCCACGTCAATCCG
CCGCCCCAGCCCAAGCCCGTCCGGCCCCAGCTGCGGCTACATCCAAGCCAGCGGGTGGTTCCGGCTTTGATGATTTTGAT
GACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.351

100

0.576
  ssb Glaesserella parasuis strain SC1401

47.396

100

0.552
  ssb Neisseria meningitidis MC58

52.601

100

0.552
  ssb Neisseria gonorrhoeae MS11

52.023

100

0.545

Multiple sequence alignment