Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FSC02_RS14115 Genome accession   NZ_CP044445
Coordinates   2933731..2934297 (-) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2928731..2939297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS14095 (FSC02_14150) - 2929289..2930113 (-) 825 WP_163170459.1 SAM-dependent methyltransferase -
  FSC02_RS14100 (FSC02_14155) - 2930117..2931415 (-) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  FSC02_RS14105 (FSC02_14160) - 2931849..2932724 (-) 876 WP_163140966.1 pirin family protein -
  FSC02_RS14110 (FSC02_14165) ahpC 2932926..2933489 (-) 564 WP_005180661.1 alkyl hydroperoxide reductase subunit C -
  FSC02_RS14115 (FSC02_14170) ssb 2933731..2934297 (-) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene
  FSC02_RS14120 (FSC02_14175) - 2934349..2935713 (-) 1365 WP_127799436.1 MFS transporter -
  FSC02_RS14125 (FSC02_14180) - 2935866..2936948 (-) 1083 WP_005180731.1 DUF475 domain-containing protein -
  FSC02_RS14130 (FSC02_14185) tenA 2937214..2937891 (+) 678 WP_163170460.1 thiaminase II -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=390065 FSC02_RS14115 WP_005180729.1 2933731..2934297(-) (ssb) [Acinetobacter indicus strain CMG3-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=390065 FSC02_RS14115 WP_005180729.1 2933731..2934297(-) (ssb) [Acinetobacter indicus strain CMG3-2]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment