Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F7V86_RS06925 Genome accession   NZ_CP044444
Coordinates   1325907..1326425 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain KC41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1320907..1331425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS06890 - 1320933..1322264 (+) 1332 WP_014419380.1 MFS transporter -
  F7V86_RS06895 - 1322298..1322678 (-) 381 WP_017418442.1 VOC family protein -
  F7V86_RS06900 - 1322734..1323672 (-) 939 WP_017418441.1 LacI family DNA-binding transcriptional regulator -
  F7V86_RS21565 - 1323735..1324301 (-) 567 Protein_1339 endonuclease/exonuclease/phosphatase family protein -
  F7V86_RS06910 - 1324298..1324855 (-) 558 WP_063636582.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  F7V86_RS06915 - 1324852..1325433 (-) 582 WP_065180700.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  F7V86_RS06920 rpsR 1325624..1325863 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  F7V86_RS06925 ssbA 1325907..1326425 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  F7V86_RS06930 rpsF 1326465..1326752 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  F7V86_RS06935 ychF 1326864..1327964 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  F7V86_RS06940 - 1328091..1330094 (-) 2004 WP_106067779.1 molybdopterin-dependent oxidoreductase -
  F7V86_RS06945 - 1330141..1330347 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=389969 F7V86_RS06925 WP_004392979.1 1325907..1326425(-) (ssbA) [Bacillus amyloliquefaciens strain KC41]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=389969 F7V86_RS06925 WP_004392979.1 1325907..1326425(-) (ssbA) [Bacillus amyloliquefaciens strain KC41]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment